› 390d

X-ray diffraction
2Å resolution

STRUCTURAL VARIABILITY AND NEW INTERMOLECULAR INTERACTIONS OF Z-DNA IN CRYSTALS OF D(PCPGPCPGPCPG)

Released:
DOI: 10.2210/pdb390d/pdb
PDB entry 390d coloured by chain, front view.
PDB entry 390d coloured by chain, side view.
PDB entry 390d coloured by chain, top view.
Source organism: Synthetic construct
Primary publication:
Structural variability and new intermolecular interactions of Z-DNA in crystals of d(pCpGpCpGpCpG).
Malinina L, Tereshko V, Ivanova E, Subirana JA, Zarytova V, Nekrasov Y
Biophys J 74 2482-90 (1998)
PMID: 9591674

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned

Structure analysis Details

Assembly composition:
homo dimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-116047 (preferred)
Entry contents:
1 distinct DNA molecule
Macromolecule:
DNA (5'-D(P*CP*GP*CP*GP*CP*G)-3') Chains: A, B, C
Molecule details ›
Chains: A, B, C
Length: 6 nucleotides
Theoretical weight: 1.81 KDa
Source organism: Synthetic construct
Expression system: Not provided

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: OTHER
Spacegroup: C2221
Unit cell:
a: 69.73Å b: 52.63Å c: 26.21Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.192 0.188 0.227
Expression system: Not provided

Quick links

Citations

4 citation in other articles

The transition between the B and Z conformations of DNA investigated by targeted molecular dynamics simulations with explicit solvation.
Kastenholz et al. (2006)
3 more

2 mentions without citation

Identification of potential microRNAs and their targets in Brassica rapa L.
Dhandapani et al. (2011)
1 more