› 392d

X-ray diffraction
3Å resolution

STRUCTURAL VARIABILITY AND NEW INTERMOLECULAR INTERACTIONS OF Z-DNA IN CRYSTALS OF D(PCPGPCPGPCPG)

Released:
DOI: 10.2210/pdb392d/pdb
PDB entry 392d coloured by chain, front view.
PDB entry 392d coloured by chain, side view.
PDB entry 392d coloured by chain, top view.
Source organism: Synthetic construct
Primary publication:
Structural variability and new intermolecular interactions of Z-DNA in crystals of d(pCpGpCpGpCpG).
Malinina L, Tereshko V, Ivanova E, Subirana JA, Zarytova V, Nekrasov Y
Biophys J 74 2482-90 (1998)
PMID: 9591674

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned

Structure analysis Details

Assembly composition:
homo dimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-116049 (preferred)
Entry contents:
1 distinct DNA molecule
Macromolecule:
DNA (5'-D(P*CP*GP*CP*GP*CP*G)-3') Chains: A, B, C, D
Molecule details ›
Chains: A, B, C, D
Length: 6 nucleotides
Theoretical weight: 1.81 KDa
Source organism: Synthetic construct
Expression system: Not provided

Ligands and Environments

1 bound ligand:
Ligand MG 1 x MG
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: OTHER
Spacegroup: C2221
Unit cell:
a: 45.8Å b: 37.3Å c: 70.3Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.188 0.182 0.245
Expression system: Not provided

Quick links

Citations

3 citation in other articles

The transition between the B and Z conformations of DNA investigated by targeted molecular dynamics simulations with explicit solvation.
Kastenholz et al. (2006)
2 more

1 mention without citation

Comparative analysis of inosine-substituted duplex DNA by circular dichroism and X-ray crystallography.
Peters et al. (2018)