3ala

X-ray diffraction
2.9Å resolution

Crystal structure of vascular adhesion protein-1 in space group C2

Released:
Source organism: Homo sapiens
Primary publication:
A new crystal form of human vascular adhesion protein 1.
Acta Crystallogr Sect F Struct Biol Cryst Commun 66 1572-8 (2010)
PMID: 21139198

Function and Biology Details

Structure analysis Details

Assembly composition:
homo dimer (preferred)
PDBe Complex ID:
PDB-CPX-172603 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecules (6 distinct):
Amine oxidase [copper-containing] 3 Chains: A, B, C, D, E, F, G
Molecule details ›
Chains: A, B, C, D, E, F, G
Length: 748 amino acids
Theoretical weight: 83.52 KDa
Source organism: Homo sapiens
Expression system: Cricetulus griseus
UniProt:
  • Canonical: Q16853 (Residues: 33-763; Coverage: 96%)
Gene names: AOC3, VAP1
Sequence domains:
Structure domains:

Ligands and Environments

Carbohydrate polymer : NEW Components: NAG, BMA
Carbohydrate polymer : NEW Components: NAG
Carbohydrate polymer : NEW Components: NAG, FUL
Carbohydrate polymer : NEW Components: NAG, FUL
Carbohydrate polymer : NEW Components: NAG, FUC
1 modified residue:

Experiments and Validation Details

Entry percentile scores
X-ray source: AUSTRALIAN SYNCHROTRON BEAMLINE MX2
Spacegroup: C2
Unit cell:
a: 394.468Å b: 115.826Å c: 179.286Å
α: 90° β: 112.34° γ: 90°
R-values:
R R work R free
0.252 0.25 0.286
Expression system: Cricetulus griseus