› 3bvn

X-ray diffraction
2.55Å resolution

High resolution crystal structure of HLA-B*1402 in complex with the latent membrane protein 2 peptide (LMP2) of Epstein-Barr virus

Released:
DOI: 10.2210/pdb3bvn/pdb
PDB entry 3bvn coloured by chain, front view.
PDB entry 3bvn coloured by chain, side view.
PDB entry 3bvn coloured by chain, top view.
Source organisms:
Primary publication:
Structural basis for T cell alloreactivity among three HLA-B14 and HLA-B27 antigens.
Kumar P, Vahedi-Faridi A, Saenger W, Merino E, López de Castro JA, Uchanska-Ziegler B, Ziegler A
J Biol Chem 284 29784-97 (2009)
PMID: 19617632

Function and Biology Details

Biochemical function:
Biological process:
Cellular component:
Sequence domains:

Structure analysis Details

Assembly composition:
hetero trimer (preferred)
PDBe Complex ID:
PDB-CPX-146534 (preferred)
Entry contents:
3 distinct polypeptide molecules
Macromolecules (3 distinct):
Ig-like domain-containing protein Chains: A, D
Molecule details ›
Chains: A, D
Length: 278 amino acids
Theoretical weight: 32.17 KDa
Source organism: Homo sapiens
Expression system: Escherichia coli
UniProt:
  • Canonical: Q56H30 (Residues: 10-286; Coverage: 94%)
Gene name: HLA-B
Sequence domains:
Structure domains:
Beta-2-microglobulin Chains: B, E
Molecule details ›
Chains: B, E
Length: 100 amino acids
Theoretical weight: 11.88 KDa
Source organism: Homo sapiens
Expression system: Escherichia coli
UniProt:
  • Canonical: P61769 (Residues: 21-119; Coverage: 100%)
Gene names: B2M, CDABP0092, HDCMA22P
Sequence domains: Immunoglobulin C1-set domain
Structure domains: Immunoglobulins
Latent membrane protein 2 Chains: C, F
Molecule details ›
Chains: C, F
Length: 9 amino acids
Theoretical weight: 1.3 KDa
Source organism: Human herpesvirus 4 strain B95-8
Expression system: Not provided
UniProt:
  • Canonical: P13285 (Residues: 236-244; Coverage: 2%)
Gene name: LMP2

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: BESSY BEAMLINE 14.2
Spacegroup: P21
Unit cell:
a: 53.383Å b: 79.953Å c: 105.44Å
α: 90° β: 99.51° γ: 90°
R-values:
R R work R free
0.265 0.24 0.268
Expression systems:
  • Escherichia coli
  • Not provided

Quick links

Citations

5 review citations

Recent advances in Takayasu arteritis.
Terao et al. (2014)
4 more

9 mentions without citation

Deciphering HLA-I motifs across HLA peptidomes improves neo-antigen predictions and identifies allostery regulating HLA specificity.
Bassani-Sternberg et al. (2017)
8 more