› 3c9l

X-ray diffraction
2.65Å resolution

Structure of ground-state bovine rhodospin in a hexagonal crystal form

Released:
DOI: 10.2210/pdb3c9l/pdb
PDB entry 3c9l coloured by chain, front view.
PDB entry 3c9l coloured by chain, side view.
PDB entry 3c9l coloured by chain, top view.
Source organism: Bos taurus
Primary publication:
Alternative models for two crystal structures of bovine rhodopsin.
Stenkamp RE
Acta Crystallogr D Biol Crystallogr D64 902-4 (2008)
PMID: 18645239

Function and Biology Details

Biochemical function:
Biological process:
Cellular component:
Sequence domains:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-136065 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecules (2 distinct):
Rhodopsin Chain: A
Molecule details ›
Chain: A
Length: 348 amino acids
Theoretical weight: 39.03 KDa
Source organism: Bos taurus
UniProt:
  • Canonical: P02699 (Residues: 1-348; Coverage: 100%)
Gene name: RHO
Sequence domains:
Structure domains: Rhodopsin 7-helix transmembrane proteins

Ligands and Environments

Carbohydrate polymer : NEW Components: NAG, BMA
Carbohydrate polymer
7 bound ligands:
Ligand ZN 1 x ZN
Ligand ACE 1 x ACE
Ligand RET 1 x RET
Ligand PLM 2 x PLM
Ligand PEF 1 x PEF
Ligand LDA 1 x LDA
Ligand C8E 6 x C8E
No modified residues

Experiments and Validation Details

Entry percentile scores
Spacegroup: P64
Unit cell:
a: 103.82Å b: 103.82Å c: 76.59Å
α: 90° β: 90° γ: 120°
R-values:
R R work R free
0.19 0.188 0.216

Quick links

Citations

8 review citations

Topology of class A G protein-coupled receptors: insights gained from crystal structures of rhodopsins, adrenergic and adenosine receptors.
Mustafi et al. (2009)
7 more

34 mentions without citation

Microbial and animal rhodopsins: structures, functions, and molecular mechanisms.
Ernst et al. (2014)
33 more