› 3cdf

X-ray diffraction
1.53Å resolution

kI O18/O8 Y87H immunoglobulin light chain variable domain

Released:
DOI: 10.2210/pdb3cdf/pdb
PDB entry 3cdf coloured by chain, front view.
PDB entry 3cdf coloured by chain, side view.
PDB entry 3cdf coloured by chain, top view.
Source organism: Homo sapiens
Primary publication:
Structural insights into the role of mutations in amyloidogenesis.
Baden EM, Randles EG, Aboagye AK, Thompson JR, Ramirez-Alvarado M
J Biol Chem 283 30950-6 (2008)
PMID: 18768467

Function and Biology Details

Biochemical function:
Biological process:
Cellular component:
Sequence domains:

Structure analysis Details

Assembly composition:
homo dimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-134444 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Immunoglobulin kappa variable 1-33 Chains: A, B, C, D, E, F
Molecule details ›
Chains: A, B, C, D, E, F
Length: 109 amino acids
Theoretical weight: 11.95 KDa
Source organism: Homo sapiens
Expression system: Escherichia coli
UniProt:
  • Canonical: P01594 (Residues: 23-117; Coverage: 100%)
Gene name: IGKV1-33
Sequence domains: Immunoglobulin V-set domain
Structure domains: Immunoglobulins

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: RIGAKU MICROMAX-007
Spacegroup: P21
Unit cell:
a: 72.959Å b: 98.043Å c: 73.074Å
α: 90° β: 119.6° γ: 90°
R-values:
R R work R free
0.191 0.189 0.231
Expression system: Escherichia coli

Quick links

Citations

6 review citations

Systemic amyloidoses.
Blancas-Mejía et al. (2013)
5 more

3 mentions without citation

Structural insights into the role of mutations in amyloidogenesis.
Baden et al. (2008)
2 more