› 3cdy

X-ray diffraction
2.43Å resolution

AL-09 H87Y, immunoglobulin light chain variable domain

Released:
DOI: 10.2210/pdb3cdy/pdb
PDB entry 3cdy coloured by chain, front view.
PDB entry 3cdy coloured by chain, side view.
PDB entry 3cdy coloured by chain, top view.
Source organism: Homo sapiens
Primary publication:
Structural insights into the role of mutations in amyloidogenesis.
Baden EM, Randles EG, Aboagye AK, Thompson JR, Ramirez-Alvarado M
J Biol Chem 283 30950-6 (2008)
PMID: 18768467

Function and Biology Details

Biochemical function:
Biological process:
Cellular component:
Sequence domains:

Structure analysis Details

Assembly composition:
homo dimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-134444 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Immunoglobulin kappa variable 1-33 Chains: A, B
Molecule details ›
Chains: A, B
Length: 109 amino acids
Theoretical weight: 12 KDa
Source organism: Homo sapiens
Expression system: Escherichia coli
UniProt:
  • Canonical: P01594 (Residues: 23-117; Coverage: 100%)
Gene name: IGKV1-33
Sequence domains: Immunoglobulin V-set domain
Structure domains: Immunoglobulins

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: APS BEAMLINE 19-BM
Spacegroup: P61
Unit cell:
a: 73.971Å b: 73.971Å c: 95.07Å
α: 90° β: 90° γ: 120°
R-values:
R R work R free
0.193 0.189 0.263
Expression system: Escherichia coli

Quick links

Citations

5 review citations

Current perspectives on cardiac amyloidosis.
Guan et al. (2012)
4 more

5 mentions without citation

Systemic amyloidoses.
Blancas-Mejía et al. (2013)
4 more