› 3d0v

X-ray diffraction
2.05Å resolution

Crystal structure of the HIV-1 Cross Neutralizing Monoclonal Antibody 2F5 in complex with gp41 Peptide LLELDKWASLW

Released:
DOI: 10.2210/pdb3d0v/pdb
PDB entry 3d0v coloured by chain, front view.
PDB entry 3d0v coloured by chain, side view.
PDB entry 3d0v coloured by chain, top view.
Source organisms:
Primary publication:
Structural details of HIV-1 recognition by the broadly neutralizing monoclonal antibody 2F5: epitope conformation, antigen-recognition loop mobility, and anion-binding site.
Julien JP, Bryson S, Nieva JL, Pai EF
J Mol Biol 384 377-92 (2008)
PMID: 18824005

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assembly composition:
hetero trimer (preferred)
PDBe Complex ID:
PDB-CPX-209053 (preferred)
Entry contents:
3 distinct polypeptide molecules
Macromolecules (3 distinct):
2F5 Fab heavy chain Chain: A
Molecule details ›
Chain: A
Length: 214 amino acids
Theoretical weight: 23.36 KDa
Source organism: Homo sapiens
Structure domains: Immunoglobulins
Ig-like domain-containing protein Chain: B
Molecule details ›
Chain: B
Length: 237 amino acids
Theoretical weight: 25.25 KDa
Source organism: Homo sapiens
UniProt:
  • Canonical: Q8NF17 (Residues: 63-165; Coverage: 20%)
Gene name: FLJ00385
Sequence domains: Immunoglobulin C1-set domain
Structure domains: Immunoglobulins
Transmembrane protein gp41 Chain: C
Molecule details ›
Chain: C
Length: 11 amino acids
Theoretical weight: 1.37 KDa
Source organism: HIV-1 M:B_HXB2R
Expression system: Not provided
UniProt:
  • Canonical: P04578 (Residues: 660-670; Coverage: 1%)
Gene name: env

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: RIGAKU
Spacegroup: P212121
Unit cell:
a: 58.2Å b: 64.6Å c: 177.7Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.218 0.218 0.232
Expression system: Not provided

Quick links

Citations

9 review citations

Structural insights into key sites of vulnerability on HIV-1 Env and influenza HA.
Julien et al. (2012)
8 more

3 mentions without citation

Structural characterization of HIV gp41 with the membrane-proximal external region.
Shi et al. (2010)
2 more