› 3d3j

X-ray diffraction
2.8Å resolution

Crystal structure of human Edc3p

Released:
DOI: 10.2210/pdb3d3j/pdb
PDB entry 3d3j coloured by chain, front view.
PDB entry 3d3j coloured by chain, side view.
PDB entry 3d3j coloured by chain, top view.
Source organism: Homo sapiens
Primary publication:
Crystal structure of human Edc3 and its functional implications.
Ling SH, Decker CJ, Walsh MA, She M, Parker R, Song H
Mol Cell Biol 28 5965-76 (2008)
PMID: 18678652

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assembly composition:
homo dimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-188494 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Enhancer of mRNA-decapping protein 3 Chain: A
Molecule details ›
Chain: A
Length: 306 amino acids
Theoretical weight: 34.17 KDa
Source organism: Homo sapiens
Expression system: Escherichia coli
UniProt:
  • Canonical: Q96F86 (Residues: 203-508; Coverage: 60%)
Gene names: EDC3, LSM16, PP844, YJDC, YJEFN2
Sequence domains:
Structure domains: YjeF N-terminal domain

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: ESRF BEAMLINE ID14-4
Spacegroup: I422
Unit cell:
a: 119.741Å b: 119.741Å c: 93.923Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.232 0.229 0.291
Expression system: Escherichia coli

Quick links

Citations

18 review citations

P-bodies and stress granules: possible roles in the control of translation and mRNA degradation.
Decker et al. (2012)
17 more

2 mentions without citation

Crystal structure of human Edc3 and its functional implications.
Ling et al. (2008)
1 more