3fhc

X-ray diffraction
2.8Å resolution

Crystal structure of human Dbp5 in complex with Nup214

Released:

Function and Biology Details

Structure analysis Details

Assembly composition:
hetero dimer (preferred)
PDBe Complex ID:
PDB-CPX-152988 (preferred)
Entry contents:
2 distinct polypeptide molecules
Macromolecules (2 distinct):
Nuclear pore complex protein Nup214 Chain: A
Molecule details ›
Chain: A
Length: 405 amino acids
Theoretical weight: 45 KDa
Source organism: Homo sapiens
Expression system: Escherichia coli BL21
UniProt:
  • Canonical: P35658 (Residues: 1-405; Coverage: 19%)
Gene names: CAIN, CAN, KIAA0023, NUP214
ATP-dependent RNA helicase DDX19B Chain: B
Molecule details ›
Chain: B
Length: 235 amino acids
Theoretical weight: 26.53 KDa
Source organism: Homo sapiens
Expression system: Escherichia coli BL21
UniProt:
  • Canonical: Q9UMR2 (Residues: 68-302; Coverage: 49%)
Gene names: DBP5, DDX19, DDX19B, TDBP
Sequence domains: DEAD/DEAH box helicase
Structure domains: P-loop containing nucleotide triphosphate hydrolases

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: SLS BEAMLINE X06SA
Spacegroup: I222
Unit cell:
a: 117.409Å b: 134.707Å c: 152.845Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.22 0.218 0.26
Expression system: Escherichia coli BL21