3k75

X-ray diffraction
2.95Å resolution

X-ray crystal structure of reduced XRCC1 bound to DNA pol beta catalytic domain

Released:
Source organisms:
Primary publication:
Oxidation state of the XRCC1 N-terminal domain regulates DNA polymerase beta binding affinity.
Proc Natl Acad Sci U S A 107 6805-10 (2010)
PMID: 20351257

Function and Biology Details

Reactions catalysed:
Deoxynucleoside triphosphate + DNA(n) = diphosphate + DNA(n+1)
The C-O-P bond 3' to the apurinic or apyrimidinic site in DNA is broken by a beta-elimination reaction, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
Biochemical function:
Biological process:
Cellular component:

Structure analysis Details

Assembly composition:
hetero dimer (preferred)
PDBe Complex ID:
PDB-CPX-139218 (preferred)
Entry contents:
2 distinct polypeptide molecules
Macromolecules (2 distinct):
DNA repair protein XRCC1 Chains: B, C
Molecule details ›
Chains: B, C
Length: 189 amino acids
Theoretical weight: 21.06 KDa
Source organism: Homo sapiens
Expression system: Escherichia coli
UniProt:
  • Canonical: P18887 (Residues: 1-183; Coverage: 29%)
Gene name: XRCC1
Sequence domains: XRCC1 N terminal domain
Structure domains: Galactose-binding domain-like
DNA polymerase beta Chains: D, E
Molecule details ›
Chains: D, E
Length: 252 amino acids
Theoretical weight: 29.34 KDa
Source organism: Rattus norvegicus
Expression system: Escherichia coli
UniProt:
  • Canonical: P06766 (Residues: 91-335; Coverage: 73%)
Gene name: Polb
Sequence domains:
Structure domains:

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: RIGAKU MICROMAX-007 HF
Spacegroup: C2
Unit cell:
a: 140.77Å b: 44.05Å c: 152.77Å
α: 90° β: 107.21° γ: 90°
R-values:
R R work R free
0.245 0.242 0.295
Expression system: Escherichia coli