› 3ogt

X-ray diffraction
1.75Å resolution

Design, Chemical synthesis, Functional characterization and Crystal structure of the sidechain analogue of 1,25-dihydroxyvitamin D3.

Released:
DOI: 10.2210/pdb3ogt/pdb
PDB entry 3ogt coloured by chain, front view.
PDB entry 3ogt coloured by chain, side view.
PDB entry 3ogt coloured by chain, top view.
Source organism: Homo sapiens
Entry authors: Huet T, Fraga R, Mourino A, Moras D, Rochel N

Function and Biology Details

Biochemical function:
Biological process:
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-145848 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Vitamin D3 receptor Chain: A
Molecule details ›
Chain: A
Length: 259 amino acids
Theoretical weight: 29.39 KDa
Source organism: Homo sapiens
Expression system: Escherichia coli
UniProt:
  • Canonical: P11473 (Residues: 118-427; Coverage: 61%)
Gene names: NR1I1, VDR
Sequence domains: Ligand-binding domain of nuclear hormone receptor
Structure domains: Retinoid X Receptor

Ligands and Environments

2 bound ligands:
Ligand FMV 1 x FMV
Ligand SO4 2 x SO4
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: ESRF BEAMLINE ID23-2
Spacegroup: P212121
Unit cell:
a: 45.018Å b: 51.622Å c: 132.818Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.161 0.16 0.184
Expression system: Escherichia coli

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