› 3ozj

X-ray diffraction
2.1Å resolution

Crystal structure of human retinoic X receptor alpha complexed with bigelovin and coactivator SRC-1

Released:
DOI: 10.2210/pdb3ozj/pdb
PDB entry 3ozj coloured by chain, front view.
PDB entry 3ozj coloured by chain, side view.
PDB entry 3ozj coloured by chain, top view.
Source organism: Homo sapiens
Primary publication:
Structure basis of bigelovin as a selective RXR agonist with a distinct binding mode.
Zhang H, Li L, Chen L, Hu L, Jiang H, Shen X
J Mol Biol 407 13-20 (2011)
PMID: 21262235

Function and Biology Details

Biochemical function:
Biological process:
Cellular component:
Sequence domains:

Structure analysis Details

Assembly composition:
hetero tetramer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-148727 (preferred)
Entry contents:
2 distinct polypeptide molecules
Macromolecules (2 distinct):
Retinoic acid receptor RXR-alpha Chains: A, C
Molecule details ›
Chains: A, C
Length: 238 amino acids
Theoretical weight: 26.67 KDa
Source organism: Homo sapiens
Expression system: Escherichia coli
UniProt:
  • Canonical: P19793 (Residues: 225-462; Coverage: 52%)
Gene names: NR2B1, RXRA
Sequence domains: Ligand-binding domain of nuclear hormone receptor
Structure domains: Retinoid X Receptor
Nuclear receptor coactivator 2 Chains: B, D
Molecule details ›
Chains: B, D
Length: 11 amino acids
Theoretical weight: 1.41 KDa
Source organism: Homo sapiens
Expression system: Not provided
UniProt:
  • Canonical: Q15596 (Residues: 686-696; Coverage: 1%)
Gene names: BHLHE75, NCOA2, SRC2, TIF2

Ligands and Environments

1 bound ligand:
Ligand BGV 2 x BGV
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: SSRF BEAMLINE BL17U
Spacegroup: P212121
Unit cell:
a: 65.4Å b: 66.59Å c: 111.73Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.245 0.245 not available
Expression systems:
  • Escherichia coli
  • Not provided

Quick links

Citations

5 review citations

A review of the molecular design and biological activities of RXR agonists.
de Almeida et al. (2019)
4 more

4 mentions without citation

The retinoid X receptors and their ligands.
Dawson et al. (2012)
3 more