› 3pv6

X-ray diffraction
2.3Å resolution

Crystal structure of NKp30 bound to its ligand B7-H6

Released:
DOI: 10.2210/pdb3pv6/pdb
PDB entry 3pv6 coloured by chain, front view.
PDB entry 3pv6 coloured by chain, side view.
PDB entry 3pv6 coloured by chain, top view.
Source organism: Homo sapiens
Entry author: Li Y

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assembly composition:
hetero dimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-127204 (preferred)
Entry contents:
2 distinct polypeptide molecules
Macromolecules (3 distinct):
Natural cytotoxicity triggering receptor 3 ligand 1 Chain: A
Molecule details ›
Chain: A
Length: 248 amino acids
Theoretical weight: 27.82 KDa
Source organism: Homo sapiens
Expression system: Spodoptera frugiperda
UniProt:
  • Canonical: Q68D85 (Residues: 25-262; Coverage: 55%)
Gene names: B7H6, NCR3LG1
Sequence domains: Immunoglobulin C1-set domain
Structure domains: Immunoglobulins
Natural cytotoxicity triggering receptor 3 Chain: B
Molecule details ›
Chain: B
Length: 117 amino acids
Theoretical weight: 12.86 KDa
Source organism: Homo sapiens
Expression system: Escherichia coli BL21(DE3)
UniProt:
  • Canonical: O14931 (Residues: 19-135; Coverage: 64%)
Gene names: 1C7, LY117, NCR3
Sequence domains: Immunoglobulin V-set domain
Structure domains: Immunoglobulins

Ligands and Environments

Carbohydrate polymer : NEW Components: NAG
Carbohydrate polymer
1 bound ligand:
Ligand NAG 2 x NAG
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: NSLS BEAMLINE X29A
Spacegroup: P212121
Unit cell:
a: 50.874Å b: 74.868Å c: 125.534Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.239 0.239 0.289
Expression systems:
  • Spodoptera frugiperda
  • Escherichia coli BL21(DE3)

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