› 3u23

X-ray diffraction
1.11Å resolution

Atomic resolution crystal structure of the 2nd SH3 domain from human CD2AP (CMS) in complex with a proline-rich peptide from human RIN3

Released:
DOI: 10.2210/pdb3u23/pdb
PDB entry 3u23 coloured by chain, front view.
PDB entry 3u23 coloured by chain, side view.
PDB entry 3u23 coloured by chain, top view.
Source organism: Homo sapiens
Primary publication:
Differential Recognition Preferences of the Three Src Homology 3 (SH3) Domains from the Adaptor CD2-associated Protein (CD2AP) and Direct Association with Ras and Rab Interactor 3 (RIN3).
Rouka E, Simister PC, Janning M, Kumbrink J, Konstantinou T, Muniz JR, Joshi D, O'Reilly N, Volkmer R, Ritter B, Knapp S, von Delft F, Kirsch KH, Feller SM
J Biol Chem 290 25275-92 (2015)
PMID: 26296892

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assembly composition:
hetero dimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-186164 (preferred)
Entry contents:
2 distinct polypeptide molecules
Macromolecules (2 distinct):
CD2-associated protein Chain: A
Molecule details ›
Chain: A
Length: 65 amino acids
Theoretical weight: 7.44 KDa
Source organism: Homo sapiens
Expression system: Escherichia coli
UniProt:
  • Canonical: Q9Y5K6 (Residues: 109-168; Coverage: 9%)
Gene name: CD2AP
Sequence domains: Variant SH3 domain
Structure domains: SH3 Domains
Ras and Rab interactor 3 Chain: B
Molecule details ›
Chain: B
Length: 17 amino acids
Theoretical weight: 1.8 KDa
Source organism: Homo sapiens
Expression system: Not provided
UniProt:
  • Canonical: Q8TB24 (Residues: 452-467; Coverage: 2%)
Gene name: RIN3

Ligands and Environments

1 bound ligand:
Ligand EDO 1 x EDO
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: DIAMOND BEAMLINE I03
Spacegroup: C2
Unit cell:
a: 53.13Å b: 32.04Å c: 39.18Å
α: 90° β: 92.56° γ: 90°
R-values:
R R work R free
0.152 0.151 0.167
Expression systems:
  • Escherichia coli
  • Not provided

Quick links

Citations

8 review citations

Microglia in Alzheimer's disease.
Hansen et al. (2018)
7 more

6 mentions without citation

A Flat BAR Protein Promotes Actin Polymerization at the Base of Clathrin-Coated Pits.
Almeida-Souza et al. (2018)
5 more