3v2a

X-ray diffraction
3.2Å resolution

VEGFR-2/VEGF-A COMPLEX STRUCTURE

Released:

Function and Biology Details

Structure analysis Details

Assembly composition:
hetero tetramer (preferred)
PDBe Complex ID:
PDB-CPX-147432 (preferred)
Entry contents:
2 distinct polypeptide molecules
Macromolecules (2 distinct):
Vascular endothelial growth factor receptor 2 Chain: R
Molecule details ›
Chain: R
Length: 772 amino acids
Theoretical weight: 86.57 KDa
Source organism: Homo sapiens
Expression system: Spodoptera frugiperda
UniProt:
  • Canonical: P35968 (Residues: 1-764; Coverage: 56%)
Gene names: FLK1, KDR, VEGFR2
Sequence domains:
Structure domains: Immunoglobulins
N-VEGF Chain: A
Molecule details ›
Chain: A
Length: 134 amino acids
Theoretical weight: 15.54 KDa
Source organism: Homo sapiens
Expression system: Komagataella pastoris
UniProt:
  • Canonical: P15692 (Residues: 207-320; Coverage: 29%)
Gene names: VEGF, VEGFA
Sequence domains: VEGF heparin-binding domain
Structure domains: Cystine-knot cytokines

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: SLS BEAMLINE X06SA
Spacegroup: P6522
Unit cell:
a: 80.969Å b: 80.969Å c: 332.063Å
α: 90° β: 90° γ: 120°
R-values:
R R work R free
0.247 0.244 0.3
Expression systems:
  • Spodoptera frugiperda
  • Komagataella pastoris