› 3w0y

X-ray diffraction
1.98Å resolution

Crystal Structure Analysis of Vitamin D receptor

Released:
DOI: 10.2210/pdb3w0y/pdb
PDB entry 3w0y coloured by chain, front view.
PDB entry 3w0y coloured by chain, side view.
PDB entry 3w0y coloured by chain, top view.
Source organism: Homo sapiens
Entry authors: Itoh S, Iijima S

Function and Biology Details

Biochemical function:
Biological process:
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-145848 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Vitamin D3 receptor Chain: A
Molecule details ›
Chain: A
Length: 253 amino acids
Theoretical weight: 28.75 KDa
Source organism: Homo sapiens
Expression system: Escherichia coli
UniProt:
  • Canonical: P11473 (Residues: 120-423; Coverage: 59%)
Gene names: NR1I1, VDR
Sequence domains: Ligand-binding domain of nuclear hormone receptor
Structure domains: Retinoid X Receptor

Ligands and Environments

1 bound ligand:
Ligand DS4 1 x DS4
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: SPRING-8 BEAMLINE BL32B2
Spacegroup: P212121
Unit cell:
a: 45.217Å b: 51.124Å c: 132.664Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.177 0.174 0.218
Expression system: Escherichia coli

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