› 3ba3

X-ray diffraction
1.55Å resolution

Crystal structure of Pyridoxamine 5'-phosphate oxidase-like protein (NP_783940.1) from Lactobacillus plantarum at 1.55 A resolution

Released:
DOI: 10.2210/pdb3ba3/pdb
PDB entry 3ba3 coloured by chain, front view.
PDB entry 3ba3 coloured by chain, side view.
PDB entry 3ba3 coloured by chain, top view.
Source organism: Lactiplantibacillus plantarum WCFS1
Entry author: Joint Center for Structural Genomics (JCSG)

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domain:

Structure analysis Details

Assembly composition:
homo dimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-123796 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Pyridoxamine 5'-phosphate oxidase family protein, FMN-binding Chains: A, B
Molecule details ›
Chains: A, B
Length: 145 amino acids
Theoretical weight: 16.21 KDa
Source organism: Lactiplantibacillus plantarum WCFS1
Expression system: Escherichia coli
UniProt:
  • Canonical: F9USS0 (Residues: 1-144; Coverage: 100%)
Gene name: lp_0091
Structure domains: Electron Transport, Fmn-binding Protein; Chain A

Ligands and Environments

2 bound ligands:
Ligand SO4 2 x SO4
Ligand EDO 10 x EDO
1 modified residue:
Ligand MSE 4 x MSE

Experiments and Validation Details

Entry percentile scores
X-ray source: ALS BEAMLINE 8.2.1
Spacegroup: P4332
Unit cell:
a: 137.379Å b: 137.379Å c: 137.379Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.171 0.17 0.196
Expression system: Escherichia coli

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