› 3bnl

X-ray diffraction
2.6Å resolution

Crystal structure of the bacterial ribosomal decoding A site in the presence of [Co(NH3)6]Cl3

Released:
DOI: 10.2210/pdb3bnl/pdb
PDB entry 3bnl coloured by chain, front view.
PDB entry 3bnl coloured by chain, side view.
PDB entry 3bnl coloured by chain, top view.
Source organism: Synthetic construct
Primary publication:
The bacterial and mitochondrial ribosomal A-site molecular switches possess different conformational substates.
Kondo J, Westhof E
Nucleic Acids Res 36 2654-66 (2008)
PMID: 18346970

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned

Structure analysis Details

Assembly composition:
homo dimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-196634 (preferred)
Entry contents:
1 distinct RNA molecule
Macromolecule:
A site of bacterial ribosome Chains: A, B
Molecule details ›
Chains: A, B
Length: 22 nucleotides
Theoretical weight: 7.05 KDa
Source organism: Synthetic construct
Expression system: Not provided

Ligands and Environments

1 bound ligand:
Ligand NCO 8 x NCO
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: ESRF BEAMLINE BM30A
Spacegroup: I4
Unit cell:
a: 73.599Å b: 73.599Å c: 63.496Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.22 0.22 0.251
Expression system: Not provided

Quick links

Citations

5 review citations

The future of aminoglycosides: the end or renaissance?
Houghton et al. (2010)
4 more

5 mentions without citation

RNA Structural Dynamics As Captured by Molecular Simulations: A Comprehensive Overview.
Šponer et al. (2018)
4 more