› 3db0

X-ray diffraction
2Å resolution

Crystal structure of Putative Pyridoxamine 5'-phosphate oxidase (NP_472219.1) from LISTERIA INNOCUA at 2.00 A resolution

Released:
DOI: 10.2210/pdb3db0/pdb
PDB entry 3db0 coloured by chain, front view.
PDB entry 3db0 coloured by chain, side view.
PDB entry 3db0 coloured by chain, top view.
Source organism: Listeria innocua
Entry author: Joint Center for Structural Genomics (JCSG)

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assemblies composition:
homo tetramer
homo dimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-187728 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Pyridoxamine 5'-phosphate oxidase putative domain-containing protein Chains: A, B
Molecule details ›
Chains: A, B
Length: 128 amino acids
Theoretical weight: 14.6 KDa
Source organism: Listeria innocua
Expression system: Escherichia coli
UniProt:
  • Canonical: Q926Z8 (Residues: 1-127; Coverage: 91%)
Gene name: lin2891
Sequence domains: Pyridoxamine 5'-phosphate oxidase
Structure domains: Electron Transport, Fmn-binding Protein; Chain A

Ligands and Environments

No bound ligands
1 modified residue:
Ligand MSE 4 x MSE

Experiments and Validation Details

Entry percentile scores
X-ray source: SSRL BEAMLINE BL11-1
Spacegroup: C2
Unit cell:
a: 92.16Å b: 42.23Å c: 62.02Å
α: 90° β: 91.59° γ: 90°
R-values:
R R work R free
0.185 0.182 0.239
Expression system: Escherichia coli

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