› 3dsg

X-ray diffraction
2.09Å resolution

XC1028 from Xanthomonas campestris Adopts a PilZ Domain-like Structure Yet with Trivial c-di-GMP Binding Activity

Released:
DOI: 10.2210/pdb3dsg/pdb
PDB entry 3dsg coloured by chain, front view.
PDB entry 3dsg coloured by chain, side view.
PDB entry 3dsg coloured by chain, top view.
Source organism: Xanthomonas campestris pv. campestris
Primary publication:
XC1028 from Xanthomonas campestris adopts a PilZ domain-like structure without a c-di-GMP switch.
Li TN, Chin KH, Liu JH, Wang AH, Chou SH
Proteins 75 282-8 (2009)
PMID: 19127589

Function and Biology Details

Biochemical function:
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domain:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-185735 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
PilZ domain-containing protein Chains: A, B, C
Molecule details ›
Chains: A, B, C
Length: 99 amino acids
Theoretical weight: 10.55 KDa
Source organism: Xanthomonas campestris pv. campestris
Expression system: Escherichia coli
UniProt:
  • Canonical: Q8PBU4 (Residues: 8-106; Coverage: 85%)
Gene names: XCC1024, pilZ
Sequence domains: PilZ domain
Structure domains: predicted glycosyltransferase like domains

Ligands and Environments

No bound ligands
1 modified residue:
Ligand MSE 6 x MSE

Experiments and Validation Details

Entry percentile scores
X-ray source: NSRRC BEAMLINE BL13B1
Spacegroup: C2
Unit cell:
a: 87.896Å b: 50.962Å c: 92.745Å
α: 90° β: 90.21° γ: 90°
R-values:
R R work R free
0.277 0.277 0.278
Expression system: Escherichia coli

Quick links

Citations

4 review citations

Cyclic di-GMP: the first 25 years of a universal bacterial second messenger.
Römling et al. (2013)
3 more

3 mentions without citation

Recent Progress and Perspective: Na Ion Batteries Used at Low Temperatures.
Li et al. (2022)
2 more