› 3dur

X-ray diffraction
1.86Å resolution

Crystal structure of SAG173-04

Released:
DOI: 10.2210/pdb3dur/pdb
PDB entry 3dur coloured by chain, front view.
PDB entry 3dur coloured by chain, side view.
PDB entry 3dur coloured by chain, top view.
Source organism: Mus musculus
Primary publication:
Pseudo-symmetry and twinning in crystals of homologous antibody Fv fragments.
Brooks CL, Blackler RJ, Gerstenbruch S, Kosma P, Müller-Loennies S, Brade H, Evans SV
Acta Crystallogr D Biol Crystallogr 64 1250-8 (2008)
PMID: 19018101

Function and Biology Details

Biochemical function:
Biological process:
Cellular component:
Sequence domains:

Structure analysis Details

Assembly composition:
hetero dimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-106853 (preferred)
Entry contents:
2 distinct polypeptide molecules
Macromolecules (2 distinct):
Ig-like domain-containing protein Chains: A, C
Molecule details ›
Chains: A, C
Length: 112 amino acids
Theoretical weight: 12.34 KDa
Source organism: Mus musculus
Expression system: Escherichia coli
UniProt:
  • Canonical: A2N494 (Residues: 1-113; Coverage: 98%)
Sequence domains: Immunoglobulin V-set domain
Structure domains: Immunoglobulins
Ig-like domain-containing protein Chains: B, D
Molecule details ›
Chains: B, D
Length: 121 amino acids
Theoretical weight: 13.4 KDa
Source organism: Mus musculus
Expression system: Escherichia coli
UniProt:
  • Canonical: A2NU21 (Residues: 19-119; Coverage: 100%)
Sequence domains: Immunoglobulin V-set domain
Structure domains: Immunoglobulins

Ligands and Environments

3 bound ligands:
Ligand KDO 2 x KDO
Ligand MG 2 x MG
Ligand PG4 2 x PG4
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: RIGAKU MICROMAX-002
Spacegroup: P212121
Unit cell:
a: 70.76Å b: 72.19Å c: 85.13Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.182 0.178 0.247
Expression system: Escherichia coli

Quick links

Citations

3 citation in other articles

Analysis of cross-reactive and specific anti-carbohydrate antibodies against lipopolysaccharide from Chlamydophila psittaci.
Gerstenbruch et al. (2010)
2 more

3 mentions without citation

Prediction of carbohydrate binding sites on protein surfaces with 3-dimensional probability density distributions of interacting atoms.
Tsai et al. (2012)
2 more