› 3gwj

X-ray diffraction
2.43Å resolution

Crystal structure of Antheraea pernyi arylphorin

Released:
DOI: 10.2210/pdb3gwj/pdb
PDB entry 3gwj coloured by chain, front view.
PDB entry 3gwj coloured by chain, side view.
PDB entry 3gwj coloured by chain, top view.
Source organism: Antheraea pernyi
Primary publication:
The presence of monoglucosylated N196-glycan is important for the structural stability of storage protein, arylphorin.
Ryu KS, Lee JO, Kwon TH, Choi HH, Park HS, Hwang SK, Lee ZW, Lee KB, Han YH, Choi YS, Jeon YH, Cheong C, Kim S
Biochem J 421 87-96 (2009)
PMID: 19358695

Function and Biology Details

Biochemical function:
Biological process:
  • not assigned
Cellular component:
Sequence domains:

Structure analysis Details

Assembly composition:
homo hexamer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-182232 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecules (3 distinct):
Arylphorin Chains: A, B, C, D, E, F
Molecule details ›
Chains: A, B, C, D, E, F
Length: 674 amino acids
Theoretical weight: 80.5 KDa
Source organism: Antheraea pernyi
UniProt:
  • Canonical: Q7Z1F8 (Residues: 24-697; Coverage: 98%)
Sequence domains:
Structure domains:

Ligands and Environments

Carbohydrate polymer : NEW Components: NAG, BMA, MAN, GLC
Carbohydrate polymer
Carbohydrate polymer : NEW Components: NAG
Carbohydrate polymer
1 bound ligand:
Ligand FMT 6 x FMT
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: SPRING-8 BEAMLINE BL12B2
Spacegroup: P212121
Unit cell:
a: 121.196Å b: 119.47Å c: 319.878Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.182 0.182 0.229

Quick links

Citations

2 review citations

Analysis of carbohydrates and glycoconjugates by matrix-assisted laser desorption/ionization mass spectrometry: an update for 2009-2010.
Harvey DJ. (2015)
1 more

5 mentions without citation

Function and 3D structure of the N-glycans on glycoproteins.
Nagae et al. (2012)
4 more