› 3hm5

X-ray diffraction
1.8Å resolution

SANT domain of human DNA methyltransferase 1 associated protein 1

Released:
DOI: 10.2210/pdb3hm5/pdb
PDB entry 3hm5 coloured by chain, front view.
PDB entry 3hm5 coloured by chain, side view.
PDB entry 3hm5 coloured by chain, top view.
Source organism: Homo sapiens
Entry authors: Dombrovski L, Tempel W, Amaya MF, Tong Y, Ni S, Bountra C, Weigelt J, Arrowsmith CH, Edwards AM, Bochkarev A, Min J, Park H, Wu H, Structural Genomics Consortium (SGC)

Function and Biology Details

Biochemical function:
Biological process:
Cellular component:
Sequence domains:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-192479 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
DNA methyltransferase 1-associated protein 1 Chain: A
Molecule details ›
Chain: A
Length: 93 amino acids
Theoretical weight: 11.22 KDa
Source organism: Homo sapiens
Expression system: Escherichia coli
UniProt:
  • Canonical: Q9NPF5 (Residues: 121-212; Coverage: 20%)
Gene names: DMAP1, KIAA1425
Sequence domains: SANT/Myb-like domain of DAMP1
Structure domains: Homeodomain-like

Ligands and Environments

2 bound ligands:
Ligand CA 1 x CA
Ligand UNX 5 x UNX
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: APS BEAMLINE 23-ID-B, CLSI BEAMLINE 08ID-1
Spacegroup: P6122
Unit cell:
a: 36.523Å b: 36.523Å c: 230.506Å
α: 90° β: 90° γ: 120°
R-values:
R R work R free
0.225 0.223 0.275
Expression system: Escherichia coli

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