› 3j4f

Electron Microscopy
8.6Å resolution

Structure of HIV-1 capsid protein by cryo-EM

Released:
DOI: 10.2210/pdb3j4f/pdb
PDB entry 3j4f coloured by chain, front view.
PDB entry 3j4f coloured by chain, side view.
PDB entry 3j4f coloured by chain, top view.
Source organism: Human immunodeficiency virus 1
Primary publication:
Mature HIV-1 capsid structure by cryo-electron microscopy and all-atom molecular dynamics.
Zhao G, Perilla JR, Yufenyuy EL, Meng X, Chen B, Ning J, Ahn J, Gronenborn AM, Schulten K, Aiken C, Zhang P
Nature 497 643-6 (2013)
PMID: 23719463
Related structures: EMD-5582

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assembly composition:
homo 210-mer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-181244 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Gag protein Chains: A, B, C, D, E, F
Molecule details ›
Chains: A, B, C, D, E, F
Length: 231 amino acids
Theoretical weight: 25.7 KDa
Source organism: Human immunodeficiency virus 1
Expression system: Escherichia coli BL21(DE3)
UniProt:
  • Canonical: Q79791 (Residues: 133-363; Coverage: 46%)
Gene name: gag
Sequence domains:

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
Resolution: 8.6Å
Relevant EMDB volumes: EMD-5582
Expression system: Escherichia coli BL21(DE3)

Quick links

Citations

126 review citations

Single-Particle Cryo-EM at Crystallographic Resolution.
Cheng Y. (2015)
125 more

10 mentions without citation

From Angstroms to Nanometers: Measuring Interatomic Distances by Solid-State NMR.
Shcherbakov et al. (2022)
9 more