› 3k17

X-ray diffraction
2.1Å resolution

Crystal structure of a Lin0012 protein from Listeria innocua

Released:
DOI: 10.2210/pdb3k17/pdb
PDB entry 3k17 coloured by chain, front view.
PDB entry 3k17 coloured by chain, side view.
PDB entry 3k17 coloured by chain, top view.
Source organism: Listeria innocua
Entry authors: Palani K, Burley SK, Swaminathan S, New York SGX Research Center for Structural Genomics (NYSGXRC)

Function and Biology Details

Reaction catalysed: 
ATP + (R)-5-phosphomevalonate = ADP + (R)-5-diphosphomevalonate
Biochemical function:
Biological process:
Cellular component:
Sequence domains:

Structure analysis Details

Assemblies composition:
homo tetramer
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-187863 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
phosphomevalonate kinase Chains: A, B, C, D
Molecule details ›
Chains: A, B, C, D
Length: 365 amino acids
Theoretical weight: 41.13 KDa
Source organism: Listeria innocua
Expression system: Escherichia coli BL21(DE3)
UniProt:
  • Canonical: Q92FU1 (Residues: 6-360; Coverage: 99%)
Gene name: lin0012
Sequence domains:
Structure domains:

Ligands and Environments

1 bound ligand:
Ligand PGE 1 x PGE
1 modified residue:
Ligand MSE 36 x MSE

Experiments and Validation Details

Entry percentile scores
X-ray source: NSLS BEAMLINE X29A
Spacegroup: P212121
Unit cell:
a: 105.966Å b: 122.362Å c: 138Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.223 0.223 0.252
Expression system: Escherichia coli BL21(DE3)

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