› 3kh1

X-ray diffraction
1.37Å resolution

Crystal structure of Predicted metal-dependent phosphohydrolase (ZP_00055740.2) from Magnetospirillum magnetotacticum MS-1 at 1.37 A resolution

Released:
DOI: 10.2210/pdb3kh1/pdb
PDB entry 3kh1 coloured by chain, front view.
PDB entry 3kh1 coloured by chain, side view.
PDB entry 3kh1 coloured by chain, top view.
Source organism: Magnetospirillum magnetotacticum MS-1
Entry author: Joint Center for Structural Genomics (JCSG)

Function and Biology Details

Biochemical function:
Biological process:
  • not assigned
Cellular component:
Sequence domains:

Structure analysis Details

Assembly composition:
homo dimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-112330 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
HD domain-containing protein Chains: A, B
Molecule details ›
Chains: A, B
Length: 200 amino acids
Theoretical weight: 22.75 KDa
Source organism: Magnetospirillum magnetotacticum MS-1
Expression system: Escherichia coli
UniProt:
  • Canonical: D1MPT5 (Residues: 1-200; Coverage: 100%)
Gene name: ZP_00055740.2
Sequence domains: HD domain
Structure domains: Hypothetical protein af1432

Ligands and Environments

3 bound ligands:
Ligand CA 1 x CA
Ligand ACT 1 x ACT
Ligand PG4 1 x PG4
1 modified residue:
Ligand MSE 8 x MSE

Experiments and Validation Details

Entry percentile scores
X-ray source: SSRL BEAMLINE BL9-1
Spacegroup: C2
Unit cell:
a: 77.852Å b: 83.906Å c: 71.278Å
α: 90° β: 116.89° γ: 90°
R-values:
R R work R free
0.133 0.132 0.164
Expression system: Escherichia coli

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