› 3ll7

X-ray diffraction
1.8Å resolution

Crystal structure of putative methyltransferase PG_1098 from Porphyromonas gingivalis W83

Released:
DOI: 10.2210/pdb3ll7/pdb
PDB entry 3ll7 coloured by chain, front view.
PDB entry 3ll7 coloured by chain, side view.
PDB entry 3ll7 coloured by chain, top view.
Source organism: Porphyromonas gingivalis
Entry authors: Chang C, Chhor G, Buck K, Joachimiak A, Midwest Center for Structural Genomics (MCSG)

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-181754 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
THUMP-like domain-containing protein Chain: A
Molecule details ›
Chain: A
Length: 410 amino acids
Theoretical weight: 46.35 KDa
Source organism: Porphyromonas gingivalis
Expression system: Escherichia coli BL21(DE3)
UniProt:
  • Canonical: Q7MVG6 (Residues: 1-407; Coverage: 100%)
Gene name: PG_1098
Sequence domains: THUMP domain-like
Structure domains:

Ligands and Environments

2 bound ligands:
Ligand EDO 4 x EDO
Ligand FMT 5 x FMT
1 modified residue:
Ligand MSE 8 x MSE

Experiments and Validation Details

Entry percentile scores
X-ray source: APS BEAMLINE 19-ID
Spacegroup: P21
Unit cell:
a: 53.132Å b: 78.485Å c: 64.063Å
α: 90° β: 104.65° γ: 90°
R-values:
R R work R free
0.183 0.182 0.209
Expression system: Escherichia coli BL21(DE3)

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