› 3lov

X-ray diffraction
2.06Å resolution

Crystal structure of Putative protoporphyrinogen oxidase (YP_001813199.1) from Exiguobacterium sp. 255-15 at 2.06 A resolution

Released:
DOI: 10.2210/pdb3lov/pdb
PDB entry 3lov coloured by chain, front view.
PDB entry 3lov coloured by chain, side view.
PDB entry 3lov coloured by chain, top view.
Source organism: Exiguobacterium sibiricum 255-15
Entry author: Joint Center for Structural Genomics (JCSG)

Function and Biology Details

Reaction catalysed: 
Coproporphyrinogen III + 3 O(2) = coproporphyrin III + 3 H(2)O(2)
Biochemical function:
Biological process:
Cellular component:
Sequence domains:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-109452 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Coproporphyrinogen III oxidase Chain: A
Molecule details ›
Chain: A
Length: 475 amino acids
Theoretical weight: 52.92 KDa
Source organism: Exiguobacterium sibiricum 255-15
Expression system: Escherichia coli
UniProt:
  • Canonical: B1YKJ9 (Residues: 1-474; Coverage: 100%)
Gene name: Exig_0701
Sequence domains: Flavin containing amine oxidoreductase
Structure domains:

Ligands and Environments


Cofactor: Ligand FAD 1 x FAD
No bound ligands
1 modified residue:
Ligand MSE 8 x MSE

Experiments and Validation Details

Entry percentile scores
X-ray source: SSRL BEAMLINE BL11-1
Spacegroup: P43212
Unit cell:
a: 74.542Å b: 74.542Å c: 212.559Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.199 0.197 0.241
Expression system: Escherichia coli

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