› 3lyd

X-ray diffraction
1.45Å resolution

Crystal structure of Putative uncharacterized protein from Jonesia denitrificans

Released:
DOI: 10.2210/pdb3lyd/pdb
PDB entry 3lyd coloured by chain, front view.
PDB entry 3lyd coloured by chain, side view.
PDB entry 3lyd coloured by chain, top view.
Source organism: Jonesia denitrificans DSM 20603
Entry authors: Chang C, Volkart L, Bearden J, Wu D, Eisen J, Kerfeld C, Joachimiak A, Midwest Center for Structural Genomics (MCSG)

Function and Biology Details

Biochemical function:
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assembly composition:
homo dimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-111747 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
DUF1795 domain-containing protein Chains: A, B
Molecule details ›
Chains: A, B
Length: 161 amino acids
Theoretical weight: 18.09 KDa
Source organism: Jonesia denitrificans DSM 20603
Expression system: Escherichia coli BL21(DE3)
UniProt:
  • Canonical: C7QYG7 (Residues: 1-158; Coverage: 100%)
Gene name: Jden_0139
Sequence domains: Probable lipoprotein LpqN
Structure domains: Mog1/PsbP, alpha/beta/alpha sandwich

Ligands and Environments

2 bound ligands:
Ligand MG 2 x MG
Ligand EDO 1 x EDO
1 modified residue:
Ligand MSE 8 x MSE

Experiments and Validation Details

Entry percentile scores
X-ray source: APS BEAMLINE 19-BM
Spacegroup: P212121
Unit cell:
a: 41.551Å b: 70.879Å c: 99.48Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.166 0.164 0.192
Expression system: Escherichia coli BL21(DE3)

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