› 3mfn

X-ray diffraction
2.02Å resolution

Dfer_2879 protein of unknown function from Dyadobacter fermentans

Released:
DOI: 10.2210/pdb3mfn/pdb
PDB entry 3mfn coloured by chain, front view.
PDB entry 3mfn coloured by chain, side view.
PDB entry 3mfn coloured by chain, top view.
Source organism: Dyadobacter fermentans DSM 18053
Entry authors: Osipiuk J, Xu X, Cui H, Chin S, Eisen J, Wu D, Kerfeld C, Savchenko A, Edwards AM, Joachimiak A, Midwest Center for Structural Genomics (MCSG)

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domain:

Structure analysis Details

Assembly composition:
homo dimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-111642 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
DUF5618 domain-containing protein Chains: A, B, C, D
Molecule details ›
Chains: A, B, C, D
Length: 157 amino acids
Theoretical weight: 18.16 KDa
Source organism: Dyadobacter fermentans DSM 18053
Expression system: Escherichia coli BL21(DE3)
UniProt:
  • Canonical: C6W4J3 (Residues: 1-133; Coverage: 100%)
Gene name: Dfer_2879
Sequence domains: Domain of unknown function (DUF5618)
Structure domains: Nucleotidyltransferases domain 2

Ligands and Environments

1 bound ligand:
Ligand ACT 1 x ACT
1 modified residue:
Ligand MSE 16 x MSE

Experiments and Validation Details

Entry percentile scores
X-ray source: APS BEAMLINE 19-ID
Spacegroup: P212121
Unit cell:
a: 69.779Å b: 83.65Å c: 93.773Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.19 0.188 0.227
Expression system: Escherichia coli BL21(DE3)

Quick links