› 3nyi

X-ray diffraction
1.9Å resolution

The crystal structure of a fat acid (stearic acid)-binding protein from Eubacterium ventriosum ATCC 27560.

Released:
DOI: 10.2210/pdb3nyi/pdb
PDB entry 3nyi coloured by chain, front view.
PDB entry 3nyi coloured by chain, side view.
PDB entry 3nyi coloured by chain, top view.
Source organism: Eubacterium ventriosum ATCC 27560
Entry authors: Zhang R, Tan K, Li H, Keigher L, Babnigg G, Joachimiak A, Midwest Center for Structural Genomics (MCSG)

Function and Biology Details

Biochemical function:
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-107803 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
EDD domain protein, DegV family Chains: A, B
Molecule details ›
Chains: A, B
Length: 296 amino acids
Theoretical weight: 33.07 KDa
Source organism: Eubacterium ventriosum ATCC 27560
Expression system: Escherichia coli
UniProt:
  • Canonical: A5Z657 (Residues: 1-293; Coverage: 100%)
Gene name: EUBVEN_01190
Sequence domains: Uncharacterised protein, DegV family COG1307
Structure domains:

Ligands and Environments

1 bound ligand:
Ligand STE 2 x STE
1 modified residue:
Ligand MSE 16 x MSE

Experiments and Validation Details

Entry percentile scores
X-ray source: APS BEAMLINE 19-ID
Spacegroup: P21
Unit cell:
a: 56.725Å b: 110.221Å c: 57.127Å
α: 90° β: 108.62° γ: 90°
R-values:
R R work R free
0.171 0.168 0.22
Expression system: Escherichia coli

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