› 3qky

X-ray diffraction
2.15Å resolution

Crystal structure of Rhodothermus marinus BamD

Released:
DOI: 10.2210/pdb3qky/pdb
PDB entry 3qky coloured by chain, front view.
PDB entry 3qky coloured by chain, side view.
PDB entry 3qky coloured by chain, top view.
Source organism: Rhodothermus marinus DSM 4252
Primary publication:
Crystal structure of BamD: an essential component of the β-Barrel assembly machinery of gram-negative bacteria.
Sandoval CM, Baker SL, Jansen K, Metzner SI, Sousa MC
J Mol Biol 409 348-57 (2011)
PMID: 21463635

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-112026 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Outer membrane lipoprotein BamD-like domain-containing protein Chain: A
Molecule details ›
Chain: A
Length: 261 amino acids
Theoretical weight: 30.88 KDa
Source organism: Rhodothermus marinus DSM 4252
Expression system: Not provided
UniProt:
  • Canonical: D0MFQ0 (Residues: 24-280; Coverage: 92%)
Gene name: Rmar_0679
Sequence domains:
Structure domains: Tetratricopeptide repeat domain

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: ALS BEAMLINE 8.2.1
Spacegroup: R3
Unit cell:
a: 114.37Å b: 114.37Å c: 77.63Å
α: 90° β: 90° γ: 120°
R-values:
R R work R free
0.171 0.169 0.21
Expression system: Not provided

Quick links

Citations

14 review citations

The β-barrel assembly machinery in motion.
Noinaj et al. (2017)
13 more

6 mentions without citation

The bacterial outer membrane β-barrel assembly machinery.
Kim et al. (2012)
5 more