› 3s93

X-ray diffraction
2.28Å resolution

Crystal structure of conserved motif in TDRD5

Released:
DOI: 10.2210/pdb3s93/pdb
PDB entry 3s93 coloured by chain, front view.
PDB entry 3s93 coloured by chain, side view.
PDB entry 3s93 coloured by chain, top view.
Source organism: Homo sapiens
Entry authors: Chao X, Tempel W, Bian C, Kania J, Wernimont AK, Bountra C, Weigelt J, Arrowsmith CH, Edwards AM, Min J, Structural Genomics Consortium (SGC)

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-185454 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Tudor domain-containing protein 5 Chains: A, B
Molecule details ›
Chains: A, B
Length: 102 amino acids
Theoretical weight: 11.36 KDa
Source organism: Homo sapiens
Expression system: Escherichia coli BL21
UniProt:
  • Canonical: Q8NAT2 (Residues: 1-101; Coverage: 10%)
Gene names: TDRD5, TUDOR3
Sequence domains: OST-HTH/LOTUS domain
Structure domains: LOTUS domain-like

Ligands and Environments

1 bound ligand:
Ligand UNX 8 x UNX
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: RIGAKU FR-E, CHESS BEAMLINE A1, CLSI BEAMLINE 08ID-1
Spacegroup: P212121
Unit cell:
a: 42.94Å b: 43.33Å c: 126.6Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.246 0.245 0.271
Expression system: Escherichia coli BL21

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