› 3tmd

X-ray diffraction
2.64Å resolution

Function and Biology Details

Biochemical function:
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-179896 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
HD-GYP domain-containing protein Chain: A
Molecule details ›
Chain: A
Length: 328 amino acids
Theoretical weight: 37.01 KDa
Source organism: Bdellovibrio bacteriovorus HD100
Expression system: Escherichia coli BL21
UniProt:
  • Canonical: Q6MM30 (Residues: 1-308; Coverage: 100%)
Gene name: Bd1817
Sequence domains: HD domain
Structure domains: Hypothetical protein af1432

Ligands and Environments

2 bound ligands:
Ligand FE 2 x FE
Ligand PO4 1 x PO4
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: ESRF BEAMLINE ID23-1
Spacegroup: P3121
Unit cell:
a: 101.01Å b: 101.01Å c: 94.5Å
α: 90° β: 90° γ: 120°
R-values:
R R work R free
0.214 0.212 0.251
Expression system: Escherichia coli BL21

Quick links

Citations

7 review citations

Cyclic di-GMP: the first 25 years of a universal bacterial second messenger.
Römling et al. (2013)
6 more

4 mentions without citation

Sensing the messenger: the diverse ways that bacteria signal through c-di-GMP.
Krasteva et al. (2012)
3 more