Structure analysis

Crystal structures of rat VDR-LBD with W282R mutation

X-ray diffraction
2.1Å resolution
Source organism: Rattus norvegicus
Assemblies composition:
hetero dimer (preferred)
monomeric
Entry contents: 2 distinct polypeptide molecules

Assemblies

Assembly 1 (preferred)
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Multimeric state: hetero dimer
Accessible surface area: 12012.02 Å2
Buried surface area: 1120.57 Å2
Dissociation area: 560.29 Å2
Dissociation energy (ΔGdiss): 3.66 kcal/mol
Dissociation entropy (TΔSdiss): 7.51 kcal/mol
Symmetry number: 1
PDBe Complex ID: PDB-CPX-146457
Assembly 2
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Multimeric state: monomeric
Accessible surface area: 11605.16 Å2
Buried surface area: 0.0 Å2
Dissociation area: 0 Å2
Dissociation energy (ΔGdiss): 0 kcal/mol
Dissociation entropy (TΔSdiss): 0 kcal/mol
Symmetry number: 1
PDBe Complex ID: PDB-CPX-146449

Macromolecules

Chain: A
Length: 271 amino acids
Theoretical weight: 30.57 KDa
Source organism: Rattus norvegicus
Expression system: Escherichia coli
UniProt:
  • Canonical: P13053 (Residues: 116-423; Coverage: 62%)
Gene names: Nr1i1, Vdr
Pfam: Ligand-binding domain of nuclear hormone receptor
InterPro:
CATH: Retinoid X Receptor

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Chain: C
Length: 13 amino acids
Theoretical weight: 1.57 KDa
Source organism: Rattus norvegicus
Expression system: Not provided

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