› 3wyw

X-ray diffraction
1.7Å resolution

Structural characterization of catalytic site of a Nilaparvata lugens delta-class glutathione transferase

Released:
DOI: 10.2210/pdb3wyw/pdb
PDB entry 3wyw coloured by chain, front view.
PDB entry 3wyw coloured by chain, side view.
PDB entry 3wyw coloured by chain, top view.
Source organism: Nilaparvata lugens
Primary publication:
Structural characterization of the catalytic site of a Nilaparvata lugens delta-class glutathione transferase.
Yamamoto K, Higashiura A, Hossain MT, Yamada N, Shiotsuki T, Nakagawa A
Arch Biochem Biophys 566 36-42 (2015)
PMID: 25497345

Function and Biology Details

Biochemical function:
Biological process:
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assembly composition:
homo dimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-185341 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Glutathione S-transferase Chains: A, B
Molecule details ›
Chains: A, B
Length: 216 amino acids
Theoretical weight: 23.88 KDa
Source organism: Nilaparvata lugens
UniProt:
  • Canonical: Q8N0B3 (Residues: 1-216; Coverage: 100%)
Gene names: gst1-1, gstd2, nlgstd
Sequence domains:
Structure domains:

Ligands and Environments

2 bound ligands:
Ligand GSH 2 x GSH
Ligand EDO 4 x EDO
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: SPRING-8 BEAMLINE BL44XU
Spacegroup: P21
Unit cell:
a: 54.552Å b: 49.104Å c: 74.184Å
α: 90° β: 99.9° γ: 90°
R-values:
R R work R free
0.177 0.175 0.217

Quick links

Citations

6 citation in other articles

Identification of a diazinon-metabolizing glutathione S-transferase in the silkworm, Bombyx mori.
Yamamoto et al. (2016)
5 more

3 mentions without citation

Glutathione S-transferase (GST) of American Cockroach, Periplaneta americana: Classes, Isoforms, and Allergenicity.
Sookrung et al. (2018)
2 more