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Fitting result in the O-layer of the subnanometer structure of the bacterial pKM101 type IV secretion system core complex digested with elastase

Source organism: Escherichia coli BL21
Biochemical function: not assigned
Biological process: not assigned
Cellular component: not assigned

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GO terms

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned

Sequence families

Pfam Protein families (Pfam)
PF20898
Domain description: P-type Type IV secretion system, TraN
Occurring in:
  1. TraN protein

PF03524
Domain description: Conjugal transfer protein
Occurring in:
  1. TraO protein
The deposited structure of PDB entry 3zbi contains 14 copies of Pfam domain PF03524 (Conjugal transfer protein) in TraO protein. Showing 1 copy in chain B.

PF03743
Domain description: Bacterial conjugation TrbI-like protein
Occurring in:
  1. TraF protein
The deposited structure of PDB entry 3zbi contains 14 copies of Pfam domain PF03743 (Bacterial conjugation TrbI-like protein) in TraF protein. Showing 1 copy in chain A.

InterPro InterPro annotations
IPR005498
Domain description: Type IV secretion system, VirB10/TraB/TrbI
Occurring in:
  1. TraF protein
IPR042217
Domain description: Type IV secretion system, VirB10/TrbI
Occurring in:
  1. TraF protein
IPR033645
Domain description: VirB9/CagX/TrbG, C-terminal
Occurring in:
  1. TraO protein
IPR010258
Domain description: Conjugal transfer, TrbG/VirB9/CagX
Occurring in:
  1. TraO protein
IPR038161
Domain description: VirB9/CagX/TrbG, C-terminal domain superfamily
Occurring in:
  1. TraO protein
IPR047695
Domain description: Type IV secretion system, VirB10/PtlG
Occurring in:
  1. TraF protein

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