4boq

X-ray diffraction
1.47Å resolution

Function and Biology Details

Reaction catalysed:
Thiol-dependent hydrolysis of ester, thioester, amide, peptide and isopeptide bonds formed by the C-terminal Gly of ubiquitin (a 76-residue protein attached to proteins as an intracellular targeting signal).
Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned

Structure analysis Details

Assembly composition:
homo dimer (preferred)
PDBe Complex ID:
PDB-CPX-178440 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Ubiquitin thioesterase OTU1 Chain: A
Molecule details ›
Chain: A
Length: 183 amino acids
Theoretical weight: 20.73 KDa
Source organism: Homo sapiens
Expression system: Escherichia coli BL21(DE3)
UniProt:
  • Canonical: Q5VVQ6 (Residues: 132-314; Coverage: 53%)
Gene names: DUBA8, HIN7, OTUD2, PRO0907, YOD1
Sequence domains: OTU-like cysteine protease
Structure domains: Cathepsin B; Chain A

Ligands and Environments

1 bound ligand:
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: ESRF BEAMLINE ID23-1
Spacegroup: P3121
Unit cell:
a: 60.67Å b: 60.67Å c: 86.18Å
α: 90° β: 90° γ: 120°
R-values:
R R work R free
0.172 0.171 0.195
Expression system: Escherichia coli BL21(DE3)