› 4e6r

X-ray diffraction
2.2Å resolution

Crystal structure of a Cytoplasmic protein NCK2 (NCK2) from Homo sapiens at 2.20 A resolution

Released:
DOI: 10.2210/pdb4e6r/pdb
PDB entry 4e6r coloured by chain, front view.
PDB entry 4e6r coloured by chain, side view.
PDB entry 4e6r coloured by chain, top view.
Source organism: Homo sapiens
Entry authors: Joint Center for Structural Genomics (JCSG), Partnership for T-Cell Biology (TCELL)

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assembly composition:
homo tetramer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-129045 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Cytoplasmic protein NCK2 Chains: A, B
Molecule details ›
Chains: A, B
Length: 58 amino acids
Theoretical weight: 6.78 KDa
Source organism: Homo sapiens
Expression system: Escherichia coli
UniProt:
  • Canonical: O43639 (Residues: 114-170; Coverage: 15%)
Gene names: GRB4, NCK2
Sequence domains: Variant SH3 domain
Structure domains: SH3 Domains

Ligands and Environments

3 bound ligands:
Ligand ZN 5 x ZN
Ligand IMD 2 x IMD
Ligand UNL 2 x UNL
2 modified residues:
Ligand MLY 6 x MLY
Ligand MSE 2 x MSE

Experiments and Validation Details

Entry percentile scores
X-ray source: SSRL BEAMLINE BL9-2
Spacegroup: P6522
Unit cell:
a: 108.398Å b: 108.398Å c: 68.199Å
α: 90° β: 90° γ: 120°
R-values:
R R work R free
0.202 0.201 0.227
Expression system: Escherichia coli

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