4f9c

X-ray diffraction
2.08Å resolution

Human CDC7 kinase in complex with DBF4 and XL413

Released:

Function and Biology Details

Reaction catalysed:
ATP + a protein = ADP + a phosphoprotein
Biochemical function:
Biological process:
Cellular component:
  • not assigned

Structure analysis Details

Assembly composition:
hetero dimer (preferred)
PDBe Complex ID:
PDB-CPX-126244 (preferred)
Entry contents:
2 distinct polypeptide molecules
Macromolecules (2 distinct):
Cell division cycle 7-related protein kinase Chain: A
Molecule details ›
Chain: A
Length: 361 amino acids
Theoretical weight: 40.63 KDa
Source organism: Homo sapiens
Expression system: Escherichia coli
UniProt:
  • Canonical: O00311 (Residues: 37-574; Coverage: 63%)
Gene names: CDC7, CDC7L1
Sequence domains: Protein kinase domain
Structure domains:
Protein DBF4 homolog A Chain: B
Molecule details ›
Chain: B
Length: 144 amino acids
Theoretical weight: 16.92 KDa
Source organism: Homo sapiens
Expression system: Escherichia coli
UniProt:
  • Canonical: Q9UBU7 (Residues: 210-350; Coverage: 21%)
Gene names: ASK, DBF4, DBF4A, ZDBF1
Sequence domains: DBF zinc finger
Structure domains:

Ligands and Environments

2 bound ligands:
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: DIAMOND BEAMLINE I03
Spacegroup: P41212
Unit cell:
a: 61.27Å b: 61.27Å c: 238.94Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.206 0.204 0.249
Expression system: Escherichia coli