4gao

X-ray diffraction
3.28Å resolution

DCNL complex with N-terminally acetylated NEDD8 E2 peptide

Released:

Function and Biology Details

Reaction catalysed:
[E1 NEDD8-activating enzyme]-S-[NEDD8 protein]-yl-L-cysteine + [E2 NEDD8-conjugating enzyme]-L-cysteine = [E1 NEDD8-activating enzyme]-L-cysteine + [E2 NEDD8-conjugating enzyme]-S-[NEDD8-protein]-yl-L-cysteine
Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned

Structure analysis Details

Assembly composition:
hetero dimer (preferred)
PDBe Complex ID:
PDB-CPX-158200 (preferred)
Entry contents:
2 distinct polypeptide molecules
Macromolecules (2 distinct):
DCN1-like protein 2 Chains: A, B, D, G
Molecule details ›
Chains: A, B, D, G
Length: 200 amino acids
Theoretical weight: 23.21 KDa
Source organism: Homo sapiens
Expression system: Escherichia coli
UniProt:
  • Canonical: Q6PH85 (Residues: 62-259; Coverage: 76%)
Gene names: C13orf17, DCUN1D2, DCUN1L2
Sequence domains: Cullin binding
Structure domains:
NEDD8-conjugating enzyme Ubc12 Chains: C, E, F, H
Molecule details ›
Chains: C, E, F, H
Length: 12 amino acids
Theoretical weight: 1.54 KDa
Source organism: Homo sapiens
Expression system: Not provided
UniProt:
  • Canonical: P61081 (Residues: 1-12; Coverage: 7%)
Gene names: UBC12, UBE2M

Ligands and Environments

1 bound ligand:
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: APS BEAMLINE 24-ID-E
Spacegroup: P21
Unit cell:
a: 48.567Å b: 190.151Å c: 49.072Å
α: 90° β: 101.75° γ: 90°
R-values:
R R work R free
0.254 0.252 0.296
Expression systems:
  • Escherichia coli
  • Not provided