4gba

X-ray diffraction
2.4Å resolution

DCNL complex with N-terminally acetylated NEDD8 E2 peptide

Released:

Function and Biology Details

Reaction catalysed:
S-[NEDD8-protein]-yl-[E2 NEDD8-conjugating enzyme]-L-cysteine + [cullin]-L-lysine = [E2 NEDD8-conjugating enzyme]-L-cysteine + N(6)-[NEDD8-protein]-yl-[cullin]-L-lysine
Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned

Structure analysis Details

Assembly composition:
hetero dimer (preferred)
PDBe Complex ID:
PDB-CPX-184887 (preferred)
Entry contents:
2 distinct polypeptide molecules
Macromolecules (2 distinct):
DCN1-like protein 3 Chains: A, B
Molecule details ›
Chains: A, B
Length: 221 amino acids
Theoretical weight: 25.67 KDa
Source organism: Homo sapiens
Expression system: Escherichia coli
UniProt:
  • Canonical: Q8IWE4 (Residues: 86-304; Coverage: 72%)
Gene names: DCUN1D3, SCCRO3
Sequence domains: Cullin binding
Structure domains:
NEDD8-conjugating enzyme UBE2F Chains: F, G
Molecule details ›
Chains: F, G
Length: 25 amino acids
Theoretical weight: 2.65 KDa
Source organism: Homo sapiens
Expression system: Not provided
UniProt:
  • Canonical: Q969M7 (Residues: 1-25; Coverage: 14%)
Gene names: NCE2, UBE2F

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: ALS BEAMLINE 8.2.2
Spacegroup: P21
Unit cell:
a: 83.465Å b: 44.578Å c: 101.216Å
α: 90° β: 103.3° γ: 90°
R-values:
R R work R free
0.196 0.194 0.227
Expression systems:
  • Escherichia coli
  • Not provided