› 4ith

X-ray diffraction
2.25Å resolution

Crystal structure of RIP1 kinase in complex with necrostatin-1 analog

Released:
DOI: 10.2210/pdb4ith/pdb
PDB entry 4ith coloured by chain, front view.
PDB entry 4ith coloured by chain, side view.
PDB entry 4ith coloured by chain, top view.
Source organism: Homo sapiens
Primary publication:
Structural basis of RIP1 inhibition by necrostatins.
Xie T, Peng W, Liu Y, Yan C, Maki J, Degterev A, Yuan J, Shi Y
Structure 21 493-9 (2013)
PMID: 23473668

Function and Biology Details

Reaction catalysed: 
ATP + a protein = ADP + a phosphoprotein
Biochemical function:
Biological process:
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-171747 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Receptor-interacting serine/threonine-protein kinase 1 Chains: A, B
Molecule details ›
Chains: A, B
Length: 294 amino acids
Theoretical weight: 33.47 KDa
Source organism: Homo sapiens
Expression system: Spodoptera frugiperda
UniProt:
  • Canonical: Q13546 (Residues: 1-294; Coverage: 44%)
Gene names: RIP, RIP1, RIPK1
Sequence domains: Protein tyrosine and serine/threonine kinase
Structure domains:

Ligands and Environments

3 bound ligands:
Ligand IOD 10 x IOD
Ligand NA 2 x NA
Ligand RCM 2 x RCM
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: SSRF BEAMLINE BL17U
Spacegroup: P212121
Unit cell:
a: 47.128Å b: 93.605Å c: 129.07Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.222 0.221 0.248
Expression system: Spodoptera frugiperda

Quick links

Citations

51 review citations

Necroptosis.
Linkermann et al. (2014)
50 more

18 mentions without citation

Advances in RIPK1 kinase inhibitors.
Chen et al. (2022)
17 more