› 4l6e

X-ray diffraction
2.5Å resolution

Crystal Structure of the RanBD1 fourth domain of E3 SUMO-protein ligase RanBP2. Northeast Structural Genomics Consortium (NESG) Target HR9193b

Released:
DOI: 10.2210/pdb4l6e/pdb
PDB entry 4l6e coloured by chain, front view.
PDB entry 4l6e coloured by chain, side view.
PDB entry 4l6e coloured by chain, top view.
Source organism: Homo sapiens
Entry authors: Vorobiev S, Su M, Seetharaman J, Mao L, Xiao R, Maglaqui M, Kogan S, Wang H, Everett JK, Acton TB, Montelione GT, Hunt JF, Tong L, Northeast Structural Genomics Consortium (NESG)

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-156035 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
E3 SUMO-protein ligase RanBP2 Chain: A
Molecule details ›
Chain: A
Length: 155 amino acids
Theoretical weight: 18.71 KDa
Source organism: Homo sapiens
Expression system: Escherichia coli BL21(DE3)
UniProt:
  • Canonical: P49792 (Residues: 2907-3050; Coverage: 5%)
Gene names: NUP358, RANBP2
Sequence domains: RanBP1 domain
Structure domains: Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB)

Ligands and Environments

No bound ligands
1 modified residue:
Ligand MSE 6 x MSE

Experiments and Validation Details

Entry percentile scores
X-ray source: NSLS BEAMLINE X4C
Spacegroup: P6122
Unit cell:
a: 69.481Å b: 69.481Å c: 152.55Å
α: 90° β: 90° γ: 120°
R-values:
R R work R free
0.198 0.197 0.222
Expression system: Escherichia coli BL21(DE3)

Quick links