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X-ray diffraction
2.5Å resolution

Crystal Structure of SYG-1 D1-D2, Glycosylated

Released:

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned

Structure analysis Details

Assembly composition:
monomeric (preferred)
PDBe Complex ID:
PDB-CPX-109405 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecules (4 distinct):
Synaptogenesis protein syg-1 Chains: A, B
Molecule details ›
Chains: A, B
Length: 274 amino acids
Theoretical weight: 30.38 KDa
Source organism: Caenorhabditis elegans
Expression system: Trichoplusia ni
UniProt:
  • Canonical: B1Q236 (Residues: 19-282; Coverage: 37%)
Gene names: K02E10.8, syg-1
Sequence domains:
Structure domains: Immunoglobulins

Ligands and Environments

Carbohydrate polymer : NEW Components: NAG, FUC
Carbohydrate polymer : NEW Components: NAG, FUC
Carbohydrate polymer : NEW Components: NAG, BMA
No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: SSRL BEAMLINE BL11-1
Spacegroup: P3221
Unit cell:
a: 92.648Å b: 92.648Å c: 129.014Å
α: 90° β: 90° γ: 120°
R-values:
R R work R free
0.199 0.196 0.252
Expression system: Trichoplusia ni