4p0b

X-ray diffraction
2.7Å resolution

Crystal structure of HOIP PUB domain in complex with OTULIN PIM

Released:
Source organism: Homo sapiens

Function and Biology Details

Reactions catalysed:
(1a) [E2 ubiquitin-conjugating enzyme]-S-ubiquitinyl-L-cysteine + [RBR-type E3 ubiquitin transferase]-L-cysteine = [E2 ubiquitin-conjugating enzyme]-L-cysteine + [RBR-type E3 ubiquitin transferase]-S-ubiquitinyl-L-cysteine
Thiol-dependent hydrolysis of ester, thioester, amide, peptide and isopeptide bonds formed by the C-terminal Gly of ubiquitin (a 76-residue protein attached to proteins as an intracellular targeting signal).
Biological process:
  • not assigned
Cellular component:

Structure analysis Details

Assembly composition:
hetero dimer (preferred)
PDBe Complex ID:
PDB-CPX-188379 (preferred)
Entry contents:
2 distinct polypeptide molecules
Macromolecules (2 distinct):
E3 ubiquitin-protein ligase RNF31 Chains: A, C
Molecule details ›
Chains: A, C
Length: 184 amino acids
Theoretical weight: 20.77 KDa
Source organism: Homo sapiens
Expression system: Bacteria
UniProt:
  • Canonical: Q96EP0 (Residues: 1-179; Coverage: 17%)
Gene names: RNF31, ZIBRA
Sequence domains:
Structure domains: Methane Monooxygenase Hydroxylase; Chain G, domain 1
Ubiquitin thioesterase otulin Chains: B, D
Molecule details ›
Chains: B, D
Length: 10 amino acids
Theoretical weight: 1.23 KDa
Source organism: Homo sapiens
Expression system: Bacteria
UniProt:
  • Canonical: Q96BN8 (Residues: 52-61; Coverage: 3%)
Gene names: FAM105B, OTULIN

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: PHOTON FACTORY BEAMLINE BL-1A
Spacegroup: P61
Unit cell:
a: 48.162Å b: 48.162Å c: 267.713Å
α: 90° β: 90° γ: 120°
R-values:
R R work R free
0.216 0.213 0.27
Expression system: Bacteria