4tu3

X-ray diffraction
3.19Å resolution

Crystal structure of yeast Sac1/Vps74 complex

Released:

Function and Biology Details

Reaction catalysed:
1-phosphatidyl-1D-myo-inositol 3-phosphate + H(2)O = 1-phosphatidyl-1D-myo-inositol + phosphate

Structure analysis Details

Assembly composition:
hetero dimer (preferred)
PDBe Complex ID:
PDB-CPX-152282 (preferred)
Entry contents:
2 distinct polypeptide molecules
Macromolecules (2 distinct):
Phosphatidylinositol-3-phosphatase SAC1 Chain: X
Molecule details ›
Chain: X
Length: 623 amino acids
Theoretical weight: 71.21 KDa
Source organism: Saccharomyces cerevisiae S288C
Expression system: Escherichia coli BL21(DE3)
UniProt:
  • Canonical: P32368 (Residues: 1-623; Coverage: 100%)
Gene names: RSD1, SAC1, YKL212W
Sequence domains: SacI homology domain
Vacuolar protein sorting-associated protein 74 Chain: A
Molecule details ›
Chain: A
Length: 345 amino acids
Theoretical weight: 39.33 KDa
Source organism: Saccharomyces cerevisiae S288C
Expression system: Escherichia coli BL21(DE3)
UniProt:
  • Canonical: Q06385 (Residues: 1-345; Coverage: 100%)
Gene names: D9481.15, VPS74, YDR372C
Sequence domains: Golgi phosphoprotein 3 (GPP34)
Structure domains: yeast vps74-n-term truncation variant domain like

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: APS BEAMLINE 24-ID-C
Spacegroup: R3
Unit cell:
a: 159.338Å b: 159.338Å c: 143.389Å
α: 90° β: 90° γ: 120°
R-values:
R R work R free
0.229 0.226 0.255
Expression system: Escherichia coli BL21(DE3)