› 4v6w

Electron Microscopy
6Å resolution

Structure of the D. melanogaster 80S ribosome

Released:
DOI: 10.2210/pdb4v6w/pdb
PDB entry 4v6w coloured by chain, front view.
PDB entry 4v6w coloured by chain, side view.
PDB entry 4v6w coloured by chain, top view.
Source organism: Drosophila melanogaster
Primary publication:
Structures of the human and Drosophila 80S ribosome.
Anger AM, Armache JP, Berninghausen O, Habeck M, Subklewe M, Wilson DN, Beckmann R
Nature 497 80-5 (2013)
PMID: 23636399
Related structures: EMD-5591

Function and Biology Details

Biochemical function:
Biological process:
Cellular component:
Sequence domains:

Structure analysis Details

Assembly composition:
hetero 86-mer (preferred)
PDBe Complex ID:
PDB-CPX-110961 (preferred)
Entry contents:
80 distinct polypeptide molecules
6 distinct RNA molecules
Macromolecules (86 distinct):
Eukaryotic translation elongation factor 2 Chain: Az
Molecule details ›
Chain: Az
Length: 844 amino acids
Theoretical weight: 94.59 KDa
Source organism: Drosophila melanogaster
UniProt:
  • Canonical: P13060 (Residues: 1-844; Coverage: 100%)
Gene names: CG2238, EF2, Ef2b, eEF2
Sequence domains:
Small ribosomal subunit protein RACK1 Chain: Ag
Molecule details ›
Chain: Ag
Length: 318 amino acids
Theoretical weight: 35.66 KDa
Source organism: Drosophila melanogaster
UniProt:
  • Canonical: O18640 (Residues: 1-318; Coverage: 100%)
Gene names: CG7111, Rack1
Sequence domains: WD domain, G-beta repeat
Small ribosomal subunit protein uS10 Chain: AU
Molecule details ›
Chain: AU
Length: 120 amino acids
Theoretical weight: 13.51 KDa
Source organism: Drosophila melanogaster
UniProt:
  • Canonical: P55828 (Residues: 1-120; Coverage: 100%)
Gene names: CG15693, RpS20
Sequence domains: Ribosomal protein S10p/S20e
Small ribosomal subunit protein eS10A Chain: AK
Molecule details ›
Chain: AK
Length: 163 amino acids
Theoretical weight: 18.26 KDa
Source organism: Drosophila melanogaster
UniProt:
  • Canonical: Q9VB14 (Residues: 1-163; Coverage: 100%)
Gene names: CG12275, RpS10, RpS10a
Sequence domains: Plectin/S10 domain
Small ribosomal subunit protein uS11A Chain: AO
Molecule details ›
Chain: AO
Length: 151 amino acids
Theoretical weight: 16.29 KDa
Source organism: Drosophila melanogaster
UniProt:
  • Canonical: C0HKA0 (Residues: 1-151; Coverage: 100%)
Gene names: CG1524, RpS14a
Sequence domains: Ribosomal protein S11
Small ribosomal subunit protein uS12 Chain: AX
Molecule details ›
Chain: AX
Length: 143 amino acids
Theoretical weight: 16.05 KDa
Source organism: Drosophila melanogaster
UniProt:
  • Canonical: Q8T3U2 (Residues: 1-143; Coverage: 100%)
Gene names: CG8415, RpS23
Sequence domains: Ribosomal protein S12/S23
Small ribosomal subunit protein eS12 Chain: AM
Molecule details ›
Chain: AM
Length: 139 amino acids
Theoretical weight: 15.19 KDa
Source organism: Drosophila melanogaster
UniProt:
  • Canonical: P80455 (Residues: 1-139; Coverage: 100%)
Gene names: CG11271, RpS12, RpS12E
Sequence domains: Ribosomal protein L7Ae/L30e/S12e/Gadd45 family
Small ribosomal subunit protein uS13 Chain: AS
Molecule details ›
Chain: AS
Length: 152 amino acids
Theoretical weight: 17.65 KDa
Source organism: Drosophila melanogaster
UniProt:
  • Canonical: P41094 (Residues: 1-152; Coverage: 100%)
Gene names: CG8900, RpS18
Sequence domains: Ribosomal protein S13/S18
Small ribosomal subunit protein uS14 Chain: Ad
Molecule details ›
Chain: Ad
Length: 56 amino acids
Theoretical weight: 6.6 KDa
Source organism: Drosophila melanogaster
UniProt:
  • Canonical: Q9VH69 (Residues: 1-56; Coverage: 100%)
Gene names: CG8495, RpS29
Sequence domains: Ribosomal protein S14p/S29e
Small ribosomal subunit protein uS15 Chain: AN
Molecule details ›
Chain: AN
Length: 151 amino acids
Theoretical weight: 17.22 KDa
Source organism: Drosophila melanogaster
UniProt:
  • Canonical: Q03334 (Residues: 1-151; Coverage: 100%)
Gene names: CG13389, M(2)32A, Rp17, RpS13
Sequence domains:
Small ribosomal subunit protein uS17 Chain: AL
Molecule details ›
Chain: AL
Length: 155 amino acids
Theoretical weight: 18.15 KDa
Source organism: Drosophila melanogaster
UniProt:
  • Canonical: Q0E9B6 (Residues: 1-155; Coverage: 100%)
Gene names: CG8857, RpS11
Sequence domains:
Small ribosomal subunit protein eS17 Chain: AR
Molecule details ›
Chain: AR
Length: 131 amino acids
Theoretical weight: 15.31 KDa
Source organism: Drosophila melanogaster
UniProt:
  • Canonical: P17704 (Residues: 1-131; Coverage: 100%)
Gene names: CG3922, M(3)67C, RpS17
Sequence domains: Ribosomal S17
Small ribosomal subunit protein uS19 Chain: AP
Molecule details ›
Chain: AP
Length: 148 amino acids
Theoretical weight: 17.07 KDa
Source organism: Drosophila melanogaster
UniProt:
  • Canonical: Q7JZW2 (Residues: 1-148; Coverage: 100%)
Gene names: CG8332, Dmel\CG8332, Dmel_CG8332, RpS15, S15, anon-EST:Posey137, anon-EST:Posey185, s15
Sequence domains: Ribosomal protein S19
Small ribosomal subunit protein eS19A Chain: AT
Molecule details ›
Chain: AT
Length: 156 amino acids
Theoretical weight: 17.33 KDa
Source organism: Drosophila melanogaster
UniProt:
  • Canonical: P39018 (Residues: 1-156; Coverage: 100%)
Gene names: CG4464, RpS19, RpS19a
Sequence domains: Ribosomal protein S19e
Small ribosomal subunit protein eS1 Chain: AB
Molecule details ›
Chain: AB
Length: 268 amino acids
Theoretical weight: 30.39 KDa
Source organism: Drosophila melanogaster
UniProt:
  • Canonical: P55830 (Residues: 1-268; Coverage: 100%)
Gene names: C3, CG2168, M(4)101, RpS3A
Sequence domains: Ribosomal S3Ae family
Small ribosomal subunit protein uS2 Chain: AA
Molecule details ›
Chain: AA
Length: 313 amino acids
Theoretical weight: 35.38 KDa
Source organism: Drosophila melanogaster
UniProt:
  • Canonical: P38979 (Residues: 1-270; Coverage: 100%)
Gene names: CG14792, sta
Sequence domains:
Small ribosomal subunit protein eS21 Chain: AV
Molecule details ›
Chain: AV
Length: 83 amino acids
Theoretical weight: 9.03 KDa
Source organism: Drosophila melanogaster
UniProt:
  • Canonical: O76927 (Residues: 1-83; Coverage: 100%)
Gene names: CG2986, RpS21, oho23B
Sequence domains: Ribosomal protein S21e
40S ribosomal protein S24 Chain: AY
Molecule details ›
Chain: AY
Length: 131 amino acids
Theoretical weight: 15.08 KDa
Source organism: Drosophila melanogaster
UniProt:
  • Canonical: Q9W229 (Residues: 1-131; Coverage: 100%)
Gene names: BcDNA:RE59324, CG3751, Dmel\CG3751, Dmel_CG3751, Rp S24, RpS24, S24, l(2)SH2 2053, l(2)SH2053
Sequence domains: Ribosomal protein S24e
Small ribosomal subunit protein eS25 Chain: AZ
Molecule details ›
Chain: AZ
Length: 117 amino acids
Theoretical weight: 13.23 KDa
Source organism: Drosophila melanogaster
UniProt:
  • Canonical: P48588 (Residues: 1-117; Coverage: 100%)
Gene names: CG6684, RpS25, RpS31
Sequence domains: S25 ribosomal protein
Small ribosomal subunit protein eS26 Chain: Aa
Molecule details ›
Chain: Aa
Length: 114 amino acids
Theoretical weight: 13.3 KDa
Source organism: Drosophila melanogaster
UniProt:
  • Canonical: P13008 (Residues: 1-114; Coverage: 100%)
Gene names: CG10305, RpS26
Sequence domains: Ribosomal protein S26e
40S ribosomal protein S27 Chain: Ab
Molecule details ›
Chain: Ab
Length: 84 amino acids
Theoretical weight: 9.38 KDa
Source organism: Drosophila melanogaster
UniProt:
  • Canonical: Q9VBU9 (Residues: 1-84; Coverage: 100%)
Gene names: CG10423, Dmel\CG10423, Dmel_CG10423, Q9VBU9_DROME, Rp S27, RpS27, anon-EST:Posey295
Sequence domains: Ribosomal protein S27
Small ribosomal subunit protein eS28 Chain: Ac
Molecule details ›
Chain: Ac
Length: 65 amino acids
Theoretical weight: 7.49 KDa
Source organism: Drosophila melanogaster
UniProt:
  • Canonical: Q9W334 (Residues: 1-65; Coverage: 100%)
Gene names: CG2998, RpS28b
Sequence domains: Ribosomal protein S28e
Small ribosomal subunit protein uS3 Chain: AD
Molecule details ›
Chain: AD
Length: 246 amino acids
Theoretical weight: 27.52 KDa
Source organism: Drosophila melanogaster
UniProt:
  • Canonical: Q06559 (Residues: 1-246; Coverage: 100%)
Gene names: CG6779, M(3)95A, RpS3
Sequence domains:
Ribosomal protein S30, isoform B Chain: Ae
Molecule details ›
Chain: Ae
Length: 132 amino acids
Theoretical weight: 14.61 KDa
Source organism: Drosophila melanogaster
UniProt:
  • Canonical: Q9VDH8 (Residues: 1-132; Coverage: 100%)
Gene names: CG15697, Dmel\CG15697, Dmel_CG15697, Q9VDH8_DROME, RpS30, RpS30a, Rps30, S30, anon-EST:Posey127
Sequence domains: Ribosomal protein S30
Small ribosomal subunit protein eS31 Chain: Af
Molecule details ›
Chain: Af
Length: 80 amino acids
Theoretical weight: 9.42 KDa
Source organism: Drosophila melanogaster
UniProt:
  • Canonical: P15357 (Residues: 77-156; Coverage: 51%)
Gene names: CG5271, RpS27A, UB3-D, UBI-F80, Ubi-m
Sequence domains: Ribosomal protein S27a
Small ribosomal subunit protein uS4 Chain: AJ
Molecule details ›
Chain: AJ
Length: 195 amino acids
Theoretical weight: 22.67 KDa
Source organism: Drosophila melanogaster
UniProt:
  • Canonical: P55935 (Residues: 1-195; Coverage: 100%)
Gene names: CG3395, RpS9
Sequence domains:
Small ribosomal subunit protein eS4 Chain: AE
Molecule details ›
Chain: AE
Length: 261 amino acids
Theoretical weight: 29.19 KDa
Source organism: Drosophila melanogaster
UniProt:
  • Canonical: P41042 (Residues: 1-261; Coverage: 100%)
Gene names: CG11276, RP4, RpS4
Sequence domains:
Small ribosomal subunit protein uS5 Chain: AC
Molecule details ›
Chain: AC
Length: 267 amino acids
Theoretical weight: 28.95 KDa
Source organism: Drosophila melanogaster
UniProt:
  • Canonical: P31009 (Residues: 1-267; Coverage: 100%)
Gene names: CG5920, RpS2, sop
Sequence domains:
Small ribosomal subunit protein eS6 Chain: AG
Molecule details ›
Chain: AG
Length: 248 amino acids
Theoretical weight: 28.48 KDa
Source organism: Drosophila melanogaster
UniProt:
  • Canonical: P29327 (Residues: 1-248; Coverage: 100%)
Gene names: CG10944, RpS6, hen, l(1)air8
Sequence domains: Ribosomal protein S6e
Small ribosomal subunit protein uS7A Chain: AF
Molecule details ›
Chain: AF
Length: 228 amino acids
Theoretical weight: 25.47 KDa
Source organism: Drosophila melanogaster
UniProt:
  • Canonical: Q24186 (Residues: 1-228; Coverage: 100%)
Gene names: CG8922, M(1)15D, RpS5, RpS5a
Sequence domains: Ribosomal protein S7p/S5e
Small ribosomal subunit protein eS7 Chain: AH
Molecule details ›
Chain: AH
Length: 194 amino acids
Theoretical weight: 22.21 KDa
Source organism: Drosophila melanogaster
UniProt:
  • Canonical: Q9VA91 (Residues: 1-194; Coverage: 100%)
Gene names: CG1883, RpS7
Sequence domains: Ribosomal protein S7e
Small ribosomal subunit protein uS8A Chain: AW
Molecule details ›
Chain: AW
Length: 130 amino acids
Theoretical weight: 14.8 KDa
Source organism: Drosophila melanogaster
UniProt:
  • Canonical: P48149 (Residues: 1-130; Coverage: 100%)
Gene names: CG2033, RpS15A, RpS15Aa
Sequence domains: Ribosomal protein S8
Small ribosomal subunit protein eS8 Chain: AI
Molecule details ›
Chain: AI
Length: 208 amino acids
Theoretical weight: 23.81 KDa
Source organism: Drosophila melanogaster
UniProt:
  • Canonical: Q8MLY8 (Residues: 1-208; Coverage: 100%)
Gene names: CG7808, RpS8
Sequence domains: Ribosomal protein S8e
Small ribosomal subunit protein uS9 Chain: AQ
Molecule details ›
Chain: AQ
Length: 148 amino acids
Theoretical weight: 16.81 KDa
Source organism: Drosophila melanogaster
UniProt:
  • Canonical: Q9W237 (Residues: 1-148; Coverage: 100%)
Gene names: CG4046, RpS16
Sequence domains: Ribosomal protein S9/S16
Hyaluronan/mRNA-binding protein domain-containing protein Chain: Ah
Molecule details ›
Chain: Ah
Length: 121 amino acids
Theoretical weight: 13.54 KDa
Source organism: Drosophila melanogaster
UniProt:
  • Canonical: Q9VBX3 (Residues: 139-259; Coverage: 27%)
Gene names: BcDNA:SD06613, CG11844, Dmel\CG11844, Dmel_CG11844, Vig2, anon-WO0118547.290, vig-2, vig2
Sequence domains: Hyaluronan / mRNA binding family
Large ribosomal subunit protein uL1 Chain: Cz
Molecule details ›
Chain: Cz
Length: 218 amino acids
Theoretical weight: 24.4 KDa
Source organism: Drosophila melanogaster
UniProt:
  • Canonical: Q9VTP4 (Residues: 1-72, 73-217; Coverage: 100%)
Gene names: CG7283, RpL10Ab
Sequence domains: Ribosomal protein L1p/L10e family
Large ribosomal subunit protein uL10 Chain: Cq
Molecule details ›
Chain: Cq
Length: 223 amino acids
Theoretical weight: 24.4 KDa
Source organism: Drosophila melanogaster
UniProt:
  • Canonical: P05388 (Residues: 5-227; Coverage: 70%)
Gene name: RPLP0
Sequence domains:
Large ribosomal subunit protein uL11 Chain: CK
Molecule details ›
Chain: CK
Length: 165 amino acids
Theoretical weight: 17.7 KDa
Source organism: Drosophila melanogaster
UniProt:
  • Canonical: Q9W1B9 (Residues: 1-165; Coverage: 100%)
Gene names: CG3195, Dmel\CG3195, Dmel_CG3195, L12, Q9W1B9_DROME, RPL12, Rp L12, RpL12, Rpl12, anon-EST:Posey236
Sequence domains:
Large ribosomal subunit protein uL13 Chain: CO
Molecule details ›
Chain: CO
Length: 205 amino acids
Theoretical weight: 23.7 KDa
Source organism: Drosophila melanogaster
UniProt:
  • Canonical: Q9VNE9 (Residues: 1-205; Coverage: 100%)
Gene names: CG1475, RpL13A
Sequence domains: Ribosomal protein L13
Large ribosomal subunit protein eL13 Chain: CL
Molecule details ›
Chain: CL
Length: 218 amino acids
Theoretical weight: 25.01 KDa
Source organism: Drosophila melanogaster
UniProt:
  • Canonical: P41126 (Residues: 1-218; Coverage: 100%)
Gene names: CG4651, RpL13, bbc1
Sequence domains: Ribosomal protein L13e
Large ribosomal subunit protein uL14 Chain: CV
Molecule details ›
Chain: CV
Length: 140 amino acids
Theoretical weight: 14.96 KDa
Source organism: Drosophila melanogaster
UniProt:
  • Canonical: P48159 (Residues: 1-140; Coverage: 100%)
Gene names: CG3661, RpL17A, RpL23
Sequence domains: Ribosomal protein L14p/L23e
Large ribosomal subunit protein eL14 Chain: CM
Molecule details ›
Chain: CM
Length: 166 amino acids
Theoretical weight: 19.22 KDa
Source organism: Drosophila melanogaster
UniProt:
  • Canonical: P55841 (Residues: 1-166; Coverage: 100%)
Gene names: CG6253, RpL14
Sequence domains: Ribosomal protein L14
Large ribosomal subunit protein uL15 Chain: Ca
Molecule details ›
Chain: Ca
Length: 149 amino acids
Theoretical weight: 17.07 KDa
Source organism: Drosophila melanogaster
UniProt:
  • Canonical: P41092 (Residues: 1-149; Coverage: 100%)
Gene names: CG15442, RpL27A, RpL27Aa, RpL27Ab, RpL27a2
Sequence domains: Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A
Large ribosomal subunit protein eL15 Chain: CN
Molecule details ›
Chain: CN
Length: 204 amino acids
Theoretical weight: 24.39 KDa
Source organism: Drosophila melanogaster
UniProt:
  • Canonical: O17445 (Residues: 1-204; Coverage: 100%)
Gene names: CG17420, RpL15, ZITI
Sequence domains: Ribosomal L15
Large ribosomal subunit protein uL16 Chain: CI
Molecule details ›
Chain: CI
Length: 218 amino acids
Theoretical weight: 25.58 KDa
Source organism: Drosophila melanogaster
UniProt:
  • Canonical: O61231 (Residues: 1-218; Coverage: 100%)
Gene names: CG17521, Qm, RpL10
Sequence domains: Ribosomal protein L16p/L10e
Large ribosomal subunit protein uL18 Chain: CD
Molecule details ›
Chain: CD
Length: 299 amino acids
Theoretical weight: 34.1 KDa
Source organism: Drosophila melanogaster
UniProt:
  • Canonical: Q9W5R8 (Residues: 1-299; Coverage: 100%)
Gene names: CG17489, RpL5, yip6
Sequence domains:
Large ribosomal subunit protein eL18 Chain: CQ
Molecule details ›
Chain: CQ
Length: 188 amino acids
Theoretical weight: 21.71 KDa
Source organism: Drosophila melanogaster
UniProt:
  • Canonical: Q9VS34 (Residues: 1-188; Coverage: 100%)
Gene names: CG8615, RpL18
Sequence domains: Ribosomal protein 60S L18 and 50S L18e
Large ribosomal subunit protein eL19 Chain: CR
Molecule details ›
Chain: CR
Length: 203 amino acids
Theoretical weight: 24.07 KDa
Source organism: Drosophila melanogaster
UniProt:
  • Canonical: P36241 (Residues: 1-203; Coverage: 100%)
Gene names: CG2746, M(2)60E, RpL19
Sequence domains: Ribosomal protein L19e
Large ribosomal subunit protein uL2 Chain: CA
Molecule details ›
Chain: CA
Length: 256 amino acids
Theoretical weight: 27.96 KDa
Source organism: Drosophila melanogaster
UniProt:
  • Canonical: Q9V3G1 (Residues: 1-256; Coverage: 100%)
Gene names: CG1263, RpL8
Sequence domains:
Large ribosomal subunit protein eL20 Chain: CS
Molecule details ›
Chain: CS
Length: 177 amino acids
Theoretical weight: 21.08 KDa
Source organism: Drosophila melanogaster
UniProt:
  • Canonical: P41093 (Residues: 1-177; Coverage: 100%)
Gene names: CG6510, RpL18A
Sequence domains: Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A
60S ribosomal protein L21 Chain: CT
Molecule details ›
Chain: CT
Length: 159 amino acids
Theoretical weight: 18.52 KDa
Source organism: Drosophila melanogaster
UniProt:
  • Canonical: Q9V9M7 (Residues: 1-159; Coverage: 100%)
Gene names: BcDNA:RH06526, CG12775, Dmel\CG12775, Dmel_CG12775, L21e, RPL21, Rp L21, RpL21, anon-EST:Posey18, anon-EST:Posey30
Sequence domains: Ribosomal protein L21e
Large ribosomal subunit protein uL22 Chain: CP
Molecule details ›
Chain: CP
Length: 186 amino acids
Theoretical weight: 21.64 KDa
Source organism: Drosophila melanogaster
UniProt:
  • Canonical: Q9W3W8 (Residues: 1-186; Coverage: 100%)
Gene names: CG3203, RpL17
Sequence domains: Ribosomal protein L22p/L17e
Large ribosomal subunit protein eL22 Chain: CU
Molecule details ›
Chain: CU
Length: 299 amino acids
Theoretical weight: 30.68 KDa
Source organism: Drosophila melanogaster
UniProt:
  • Canonical: P50887 (Residues: 1-299; Coverage: 100%)
Gene names: CG7434, RpL22
Sequence domains: Ribosomal L22e protein family
Large ribosomal subunit protein uL23 N-terminal domain-containing protein Chain: CX
Molecule details ›
Chain: CX
Length: 277 amino acids
Theoretical weight: 29.54 KDa
Source organism: Drosophila melanogaster
UniProt:
  • Canonical: Q9W0A8 (Residues: 1-277; Coverage: 100%)
Gene names: 153215_at, CG7977, Dmel\CG7977, Dmel_CG7977, L23, L23A, L23a, PBP-3, RPL23a, Rp L23A, RpL23A, RpL23a, RpL25, anon-EST:Liang-1.4, anon-EST:fe2D1, clone 1.4, eRpL23a, rpL25, rpl23a
Sequence domains:
Large ribosomal subunit protein uL24 Chain: CY
Molecule details ›
Chain: CY
Length: 149 amino acids
Theoretical weight: 17.32 KDa
Source organism: Drosophila melanogaster
UniProt:
  • Canonical: Q9VVU2 (Residues: 1-149; Coverage: 100%)
Gene names: CG6846, Dmel\CG6846, Dmel_CG6846, L24, L26, RPL26, Rp L26, RpL26, lincRNA.S5499
Sequence domains:
Large ribosomal subunit protein eL24 Chain: CW
Molecule details ›
Chain: CW
Length: 155 amino acids
Theoretical weight: 17.57 KDa
Source organism: Drosophila melanogaster
UniProt:
  • Canonical: Q9VJY6 (Residues: 1-155; Coverage: 100%)
Gene names: CG9282, RpL24
Sequence domains: Ribosomal protein L24e
60S ribosomal protein L27 Chain: CZ
Molecule details ›
Chain: CZ
Length: 135 amino acids
Theoretical weight: 15.95 KDa
Source organism: Drosophila melanogaster
UniProt:
  • Canonical: Q9VBN5 (Residues: 1-135; Coverage: 100%)
Gene names: CG4759, Dmel\CG4759, Dmel_CG4759, RPL27, RpL27, RpL27e, chr3R:21510055..21510241
Sequence domains:
Large ribosomal subunit protein eL28 Chain: Cr
Molecule details ›
Chain: Cr
Length: 144 amino acids
Theoretical weight: 16.07 KDa
Source organism: Drosophila melanogaster
UniProt:
  • Canonical: Q9VZS5 (Residues: 1-144; Coverage: 100%)
Gene names: CG12740, RpL28
Sequence domains: Ribosomal L28e protein family
60S ribosomal protein L35 Chain: Ch
Molecule details ›
Chain: Ch
Length: 123 amino acids
Theoretical weight: 14.49 KDa
Source organism: Drosophila melanogaster
UniProt:
  • Canonical: Q9W499 (Residues: 1-123; Coverage: 100%)
Gene names: BcDNA:RE09547, CG4111, Dmel\CG4111, Dmel_CG4111, Rp L35, RpL35, RpL35-RB, RpL35e, anon-EST:Posey157, anon-EST:fe1C12
Sequence domains: Ribosomal L29 protein
Large ribosomal subunit protein eL29 Chain: Cb
Molecule details ›
Chain: Cb
Length: 76 amino acids
Theoretical weight: 8.95 KDa
Source organism: Drosophila melanogaster
UniProt:
  • Canonical: Q24154 (Residues: 1-76; Coverage: 100%)
Gene names: CG10071, RpL29, RpL43
Sequence domains: Ribosomal L29e protein family
Large ribosomal subunit protein uL3 Chain: CB
Molecule details ›
Chain: CB
Length: 416 amino acids
Theoretical weight: 47.02 KDa
Source organism: Drosophila melanogaster
UniProt:
  • Canonical: O16797 (Residues: 1-416; Coverage: 100%)
Gene names: CG4863, RpL3
Sequence domains: Ribosomal protein L3
Large ribosomal subunit protein uL30 Chain: CF
Molecule details ›
Chain: CF
Length: 252 amino acids
Theoretical weight: 29.62 KDa
Source organism: Drosophila melanogaster
UniProt:
  • Canonical: P32100 (Residues: 1-252; Coverage: 100%)
Gene names: CG4897, RpL7
Sequence domains:
Large ribosomal subunit protein eL30 Chain: Cc
Molecule details ›
Chain: Cc
Length: 111 amino acids
Theoretical weight: 12.25 KDa
Source organism: Drosophila melanogaster
UniProt:
  • Canonical: Q9VJ19 (Residues: 1-111; Coverage: 100%)
Gene names: BcDNA:RE25263, BcDNA:RH09938, CG10652, Dmel\CG10652, Dmel_CG10652, L30, L30e, RPL30, Rp L30, RpL30, Rpl30, anon-EST:fe1D4, l(2)01265, l(2)SH0229, l(2)SH2 0229, l(2)k09918, plume
Sequence domains: Ribosomal protein L7Ae/L30e/S12e/Gadd45 family
Large ribosomal subunit protein eL31 Chain: Cd
Molecule details ›
Chain: Cd
Length: 124 amino acids
Theoretical weight: 14.56 KDa
Source organism: Drosophila melanogaster
UniProt:
  • Canonical: Q9V597 (Residues: 1-124; Coverage: 100%)
Gene names: CG1821, RpL31
Sequence domains: Ribosomal protein L31e
Large ribosomal subunit protein eL32 Chain: Ce
Molecule details ›
Chain: Ce
Length: 134 amino acids
Theoretical weight: 16.06 KDa
Source organism: Drosophila melanogaster
UniProt:
  • Canonical: P04359 (Residues: 1-134; Coverage: 100%)
Gene names: CG7939, M(3)99D, RpL32, rp49
Sequence domains: Ribosomal protein L32
Large ribosomal subunit protein eL33 Chain: Cf
Molecule details ›
Chain: Cf
Length: 157 amino acids
Theoretical weight: 17.7 KDa
Source organism: Drosophila melanogaster
UniProt:
  • Canonical: Q9VNB9 (Residues: 1-157; Coverage: 100%)
Gene names: CG2099, Dmel\CG2099, Dmel_CG2099, L35a, Rp L35A, RpL35A, Rpl35A, anon-EST:Posey39
Sequence domains: Ribosomal protein L35Ae
Large ribosomal subunit protein eL34 Chain: Cg
Molecule details ›
Chain: Cg
Length: 162 amino acids
Theoretical weight: 18.12 KDa
Source organism: Drosophila melanogaster
UniProt:
  • Canonical: Q9VBH8 (Residues: 1-162; Coverage: 100%)
Gene names: CG6090, CG6090-RA, Dmel\CG6090, Dmel_CG6090, L34, RpL34, RpL34a
Sequence domains: Ribosomal protein L34e
Large ribosomal subunit protein eL36 Chain: Ci
Molecule details ›
Chain: Ci
Length: 115 amino acids
Theoretical weight: 13.54 KDa
Source organism: Drosophila melanogaster
UniProt:
  • Canonical: P49630 (Residues: 1-115; Coverage: 100%)
Gene names: CG7622, M(1)1B, RpL36
Sequence domains: Ribosomal protein L36e
Large ribosomal subunit protein eL37A Chain: Cj
Molecule details ›
Chain: Cj
Length: 93 amino acids
Theoretical weight: 10.67 KDa
Source organism: Drosophila melanogaster
UniProt:
  • Canonical: Q9VXX8 (Residues: 1-93; Coverage: 100%)
Gene names: CG9091, RpL37-1, RpL37a
Sequence domains: Ribosomal protein L37e
Large ribosomal subunit protein eL38 Chain: Ck
Molecule details ›
Chain: Ck
Length: 70 amino acids
Theoretical weight: 8.22 KDa
Source organism: Drosophila melanogaster
UniProt:
  • Canonical: Q9W5N2 (Residues: 1-70; Coverage: 100%)
Gene names: CG18001, RpL38
Sequence domains: Ribosomal L38e protein family
Large ribosomal subunit protein eL39 Chain: Cl
Molecule details ›
Chain: Cl
Length: 51 amino acids
Theoretical weight: 6.32 KDa
Source organism: Drosophila melanogaster
UniProt:
  • Canonical: O16130 (Residues: 1-51; Coverage: 100%)
Gene names: CG3997, RpL39, RpL46, rp46
Sequence domains: Ribosomal L39 protein
Large ribosomal subunit protein uL4 Chain: CC
Molecule details ›
Chain: CC
Length: 401 amino acids
Theoretical weight: 45.12 KDa
Source organism: Drosophila melanogaster
UniProt:
  • Canonical: P09180 (Residues: 1-401; Coverage: 100%)
Gene names: CG5502, RpL1, RpL4
Sequence domains:
Large ribosomal subunit protein eL40 Chain: Cm
Molecule details ›
Chain: Cm
Length: 52 amino acids
Theoretical weight: 6.2 KDa
Source organism: Drosophila melanogaster
UniProt:
  • Canonical: P18101 (Residues: 77-128; Coverage: 41%)
Gene names: CG2960, RpL40, UBI-F52, Ubi-f
Sequence domains: Ribosomal L40e family
60S ribosomal protein L41 Chain: Cn
Molecule details ›
Chain: Cn
Length: 25 amino acids
Theoretical weight: 3.42 KDa
Source organism: Drosophila melanogaster
UniProt:
  • Canonical: Q962S2 (Residues: 1-25; Coverage: 100%)
Gene names: BEST:LP07070, BcDNA:LP07070, BcDNA:RE63504, CG30425, CR30425, Dmel\CG30425, Dmel_CG30425, L41, RpL41, Rpl41, pncr005:2R
Sequence domains: Ribosomal protein L41
Large ribosomal subunit protein eL43 Chain: Cp
Molecule details ›
Chain: Cp
Length: 92 amino acids
Theoretical weight: 10.34 KDa
Source organism: Drosophila melanogaster
UniProt:
  • Canonical: Q9VMU4 (Residues: 1-92; Coverage: 100%)
Gene names: CG5827, RpL37A
Sequence domains: Ribosomal L37ae protein family
Large ribosomal subunit protein eL42 Chain: Co
Molecule details ›
Chain: Co
Length: 104 amino acids
Theoretical weight: 12.54 KDa
Source organism: Drosophila melanogaster
UniProt:
  • Canonical: Q9VLT7 (Residues: 1-104; Coverage: 100%)
Gene names: CG7424, Dmel\CG7424, Dmel_CG7424, L44e, RpL36A, anon-EST:fe1B2
Sequence domains: Ribosomal protein L44
Large ribosomal subunit protein uL5 Chain: CJ
Molecule details ›
Chain: CJ
Length: 184 amino acids
Theoretical weight: 21.15 KDa
Source organism: Drosophila melanogaster
UniProt:
  • Canonical: P46222 (Residues: 1-184; Coverage: 100%)
Gene names: CG7726, RPL11A, RpL11
Sequence domains:
Large ribosomal subunit protein uL6 Chain: CH
Molecule details ›
Chain: CH
Length: 190 amino acids
Theoretical weight: 21.43 KDa
Source organism: Drosophila melanogaster
UniProt:
  • Canonical: P50882 (Residues: 1-190; Coverage: 100%)
Gene names: CG6141, M(2)32D, RpL9
Sequence domains: Ribosomal protein L6
Large ribosomal subunit protein eL6 Chain: CE
Molecule details ›
Chain: CE
Length: 243 amino acids
Theoretical weight: 27.77 KDa
Source organism: Drosophila melanogaster
UniProt:
  • Canonical: Q9V9W2 (Residues: 1-243; Coverage: 100%)
Gene names: CG11522, Dmel\CG11522, Dmel_CG11522, RPL6, Rp L6, RpL6, rpl6
Sequence domains:
Large ribosomal subunit protein eL8 Chain: CG
Molecule details ›
Chain: CG
Length: 271 amino acids
Theoretical weight: 30.8 KDa
Source organism: Drosophila melanogaster
UniProt:
  • Canonical: P46223 (Residues: 1-271; Coverage: 100%)
Gene names: CG3314, RpL7A, SURF-3
Sequence domains: Ribosomal protein L7Ae/L30e/S12e/Gadd45 family
18S Ribosomal RNA Chain: B2
Molecule details ›
Chain: B2
Length: 1995 nucleotides
Theoretical weight: 641.83 KDa
Sequence domains: Eukaryotic small subunit ribosomal RNA
E-tRNA Chain: BC
Molecule details ›
Chain: BC
Length: 75 nucleotides
Theoretical weight: 24.25 KDa
Sequence domains: tRNA
28S ribosomal RNA Chain: A5
Molecule details ›
Chain: A5
Length: 3970 nucleotides
Theoretical weight: 1277.67 KDa
Sequence domains: Eukaryotic large subunit ribosomal RNA
2S ribosomal RNA Chain: A9
Molecule details ›
Chain: A9
Length: 30 nucleotides
Theoretical weight: 9.67 KDa
5S ribosomal RNA Chain: A7
Molecule details ›
Chain: A7
Length: 120 nucleotides
Theoretical weight: 38.63 KDa
Sequence domains: 5S ribosomal RNA
5.8S ribosomal RNA Chain: A8
Molecule details ›
Chain: A8
Length: 123 nucleotides
Theoretical weight: 39.62 KDa
Sequence domains: 5.8S ribosomal RNA

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
Resolution: 6Å
Relevant EMDB volumes: EMD-5591

Quick links

Citations

53 review citations

Ribosome-targeting antibiotics and mechanisms of bacterial resistance.
Wilson DN. (2014)
52 more

20 mentions without citation

The space between notes: emerging roles for translationally silent ribosomes.
Smith et al. (2022)
19 more