› 4zfr

X-ray diffraction
1.72Å resolution

Catalytic domain of Sst2 F403A mutant bound to ubiquitin

Released:
DOI: 10.2210/pdb4zfr/pdb
PDB entry 4zfr coloured by chain, front view.
PDB entry 4zfr coloured by chain, side view.
PDB entry 4zfr coloured by chain, top view.
Source organisms:
Entry author: Shrestha RK

Function and Biology Details

Biochemical function:
Biological process:
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assembly composition:
hetero dimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-143292 (preferred)
Entry contents:
2 distinct polypeptide molecules
Macromolecules (2 distinct):
AMSH-like protease sst2 Chain: A
Molecule details ›
Chain: A
Length: 197 amino acids
Theoretical weight: 21.91 KDa
Source organism: Schizosaccharomyces pombe 972h-
Expression system: Escherichia coli
UniProt:
  • Canonical: Q9P371 (Residues: 245-435; Coverage: 44%)
Gene names: SPAC19B12.10, sst2
Sequence domains: JAB1/Mov34/MPN/PAD-1 ubiquitin protease
Structure domains: Cytidine Deaminase, domain 2
Ubiquitin Chain: B
Molecule details ›
Chain: B
Length: 81 amino acids
Theoretical weight: 8.99 KDa
Source organism: Homo sapiens
Expression system: Escherichia coli
UniProt:
  • Canonical: P0CG47 (Residues: 153-228; Coverage: 33%)
Gene name: UBB
Sequence domains: Ubiquitin family

Ligands and Environments

2 bound ligands:
Ligand ZN 2 x ZN
Ligand EDO 2 x EDO
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: APS BEAMLINE 23-ID-B
Spacegroup: P21
Unit cell:
a: 42.139Å b: 58.174Å c: 56.442Å
α: 90° β: 109.3° γ: 90°
R-values:
R R work R free
0.203 0.201 0.237
Expression system: Escherichia coli

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